Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 592 a.a., putative sigma-54-interacting transcriptional activator from Escherichia coli BL21

 Score =  202 bits (514), Expect = 3e-56
 Identities = 147/486 (30%), Positives = 248/486 (51%), Gaps = 62/486 (12%)

Query: 156 LIGVLDITSEQQKHTLSTQVVVQNMVQ-----LVENQLLNQIPHGHVRIDLACEPSLLSS 210
           +I ++ +T EQQ+H         + V+      V   L +Q P  ++    A   +++ +
Sbjct: 112 VISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISKIFA---TMIDN 168

Query: 211 GWQGVIIADESGQILAHNQVAGQLLA--QGRVIGQSVEQVLPRPQT--------HASFIY 260
             QGV++ D+  ++   NQ A + L   Q  +IG+ +     RP T        H   I 
Sbjct: 169 MDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIRF---RPLTFESNFTHGHMQHIV 225

Query: 261 TTTP--------LHSKQHRTRALTPASDLH-----------------FGDAEVERCWQQA 295
           +           LH+ Q R   L      H                  G+  V R  ++ 
Sbjct: 226 SWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRL 285

Query: 296 -NRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYV 354
            +R+      ++++G++G GK    +A+HK S R+N P +A+NC A+ ++L+E+ELFGYV
Sbjct: 286 ISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345

Query: 355 AGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKV 414
            GAFTGAS  G  G ++ A+ G LFLDEI D+PL  Q++LL  ++ + +LP+G++   +V
Sbjct: 346 KGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV 405

Query: 415 DIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQ-DRQALIH---HIH-RR 469
           DI+II+AT++NL Q + +G FR+DL+YRL+ + + LP  ++RQ D + L+H   H+H RR
Sbjct: 406 DIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRR 465

Query: 470 YSDAGQQICGDLMQRLLAYHWPGNLRELDSLIK-VASLMAEGEGVLTFNHLPTHLAQKLS 528
                  I  D+++ L  + WPGNLREL +L++ + +++  GE V+    LP +L    +
Sbjct: 466 LGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE-VIDSTLLPPNLLNNGT 524

Query: 529 HAAPTATE--------DDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKL 580
                 TE        DD        +E  +++   +   +    +  LG+   T+YRK+
Sbjct: 525 TEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSKKLVADELGIGIATLYRKI 584

Query: 581 KALGIL 586
           K   +L
Sbjct: 585 KKYELL 590