Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., DNA-binding transcriptional regulator NtrC from Azospirillum sp. SherDot2

 Score =  200 bits (508), Expect = 1e-55
 Identities = 148/427 (34%), Positives = 220/427 (51%), Gaps = 63/427 (14%)

Query: 215 VIIADESGQILAHNQVAGQLLAQGRVIGQSVEQVL---PRPQTHASFIYTTTPLHSKQHR 271
           V++ DE+G  L       +L  + RVI  S +  L    +     +F Y   P   K+  
Sbjct: 55  VVMPDENGLDLIPR--IKKLRPEMRVIVMSAQNTLITAVKAAERGAFEYLPKPFDLKELV 112

Query: 272 T---RAL---TPASDLHFGDAEVER---------CWQQANRVIDK----DIRLLILGQTG 312
           +   RAL   TP + +  GD E E            Q+  RV+ +    D+ ++I G++G
Sbjct: 113 SVVERALNTNTPPAAMPGGDMESEEQLPLIGRSPAMQEIYRVLARLMGTDLTVMITGESG 172

Query: 313 VGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRL 372
            GK    +ALH   +R+NG  VA+N  A+ +EL+E+ELFG+  GAFTGA+++   G+   
Sbjct: 173 TGKELVARALHDYGKRRNGAFVAINMAAIPRELIESELFGHEKGAFTGATNRS-TGRFEQ 231

Query: 373 ADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQ 432
           A  G LFLDEI D+PLDAQ+RLL VLQ+     VG   A K D++IIAATH++L  L+ Q
Sbjct: 232 AQGGTLFLDEIGDMPLDAQTRLLRVLQEGEYTTVGGRTAIKTDVRIIAATHRDLRTLIRQ 291

Query: 433 GLFRQDLYYRLSDLVVELPSFQQR-QDRQALIHHIHRRYSDAG---QQICGDLMQRLLAY 488
           GLFR+DL+YRL  + + LP  ++R +D   L+ H        G   + I    M RL  Y
Sbjct: 292 GLFREDLFYRLCVVPIRLPPLRERTEDIPLLVRHFLNLGISQGLPAKSIDQAAMDRLKRY 351

Query: 489 HWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATEDDQQKDIKSTVE 548
            WPGN+REL++L++  + +   E V+  + +   LA     A P   E+ Q + + S VE
Sbjct: 352 RWPGNVRELENLVRRLAALYSQE-VIGLDVVEAELADATPAAQP--VEEPQSEGLSSAVE 408

Query: 549 ASLLKTY------------------------------QATQGNISQTSRLLGLSRNTIYR 578
              LK Y                               AT+GN  + ++LLGL+RNT+ +
Sbjct: 409 RH-LKDYFAAHKDGMPSNGLYDRVLREIERPLISLSLSATRGNQIKAAQLLGLNRNTLRK 467

Query: 579 KLKALGI 585
           K++ L I
Sbjct: 468 KIRDLDI 474