Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Nitrogen regulation protein NR(I) from Alteromonas macleodii MIT1002

 Score =  192 bits (489), Expect = 2e-53
 Identities = 128/349 (36%), Positives = 191/349 (54%), Gaps = 31/349 (8%)

Query: 266 HSKQHRTRALTPASDLH---FGDAE-VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKA 321
           H+++  T +     D+     G+A  ++  ++   R+    I +LI GQ+G GK     A
Sbjct: 122 HAREQSTVSKAQVEDVVTEIIGEAPAMQEVFRAIGRLSRSSISVLINGQSGTGKELVAHA 181

Query: 322 LHKNSQRKNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLD 381
           LH++S R + P +A+N  A+  +LVE+ELFG+  GAFTGA     QG+   AD G LFLD
Sbjct: 182 LHRHSPRASKPFIALNMAAIPADLVESELFGHEKGAFTGAQ-AARQGRFEQADGGTLFLD 240

Query: 382 EIADLPLDAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYY 441
           EI D+PLD Q+RLL VL D     VG + +  VD++IIAATH+NLEQ V +G FR+DL++
Sbjct: 241 EIGDMPLDVQTRLLRVLADGQFYRVGGHQSVSVDVRIIAATHQNLEQRVAEGKFREDLFH 300

Query: 442 RLSDLVVELPSF-QQRQDRQALIHHIHRRYSD----AGQQICGDLMQRLLAYHWPGNLRE 496
           RL+ + V LPS  ++R+D   L  H  RR +       + I  D  + +    WPGN+R+
Sbjct: 301 RLNVIRVHLPSLNERREDIPLLTRHFLRRAAKELDVEAKSISKDAERVMSQLPWPGNVRQ 360

Query: 497 LDSLIKVASLMAEGEGVLTFNHLPTHLAQKLSHAAPTATE----------DDQQ------ 540
           L+++ +  ++MA G+ VL  + LP  +    S   P+A             D+Q      
Sbjct: 361 LENVCRWLTVMASGQEVLP-SDLPPEIHSDSSIEKPSAESGEWPDLLASWTDKQLRDGHH 419

Query: 541 ---KDIKSTVEASLL-KTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
               D   T E  +L +  Q T G+    ++ LG  RNT+ RKLK LG+
Sbjct: 420 NILNDAMLTFERIMLERALQHTHGHKQDAAKRLGWGRNTLTRKLKELGV 468