Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., Quorum-sensing regulator protein F from Alteromonas macleodii MIT1002

 Score =  194 bits (494), Expect = 5e-54
 Identities = 121/365 (33%), Positives = 194/365 (53%), Gaps = 25/365 (6%)

Query: 226 AHNQVAGQLLAQGRVIGQSVEQVLPRPQTHASFIYTTTPLHSKQHRTRALTPASDLHFGD 285
           AH  +A  + A  R     V   LP+P  H           S+    +    A D+    
Sbjct: 88  AHGTIADAVAATQR----GVFGFLPKPVDHDELRALLQKALSQSQAAQPGDWAKDIITRS 143

Query: 286 AEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKEL 345
            E+     QA R+  +++ +LI G +G GK     A+HK S R + P VA+NCGAL + L
Sbjct: 144 PEMLNVLDQAFRIAQREVSVLISGASGTGKELLANAIHKASNRSDKPFVAINCGALPENL 203

Query: 346 VEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLP 405
           +E+ELFG+  GAFTGA    + G  R AD G LFLDEI D+P+  Q +LL  LQ++ + P
Sbjct: 204 LESELFGHAKGAFTGAV-AAHPGLFREADGGTLFLDEIGDMPMTLQVKLLRALQERQIRP 262

Query: 406 VGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQD-----RQ 460
           VGS+    +D++II+ATHK+L + + +G FR+DLYYRL+ + ++LPS + R +      +
Sbjct: 263 VGSSKHVDIDVRIISATHKDLHKEMEEGTFREDLYYRLNVVNLKLPSLKSRSEDIPLLAR 322

Query: 461 ALIHHIHRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLP 520
           +L+    +R+     Q   D MQ+L+   WPGN+R+L ++++    + +   +      P
Sbjct: 323 SLLQQSAQRHGVNVSQFSDDAMQQLVTSSWPGNVRQLVNVVEQCVALTQTPVI------P 376

Query: 521 THLAQKLSHAA----PTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTI 576
            HL ++   A     PT TE     +     +  L K  + T GN+++ + L G +R  +
Sbjct: 377 LHLVEQALSATKQSWPTLTEARDAFE-----QQYLHKLLKMTDGNVTRAAELAGRNRTDM 431

Query: 577 YRKLK 581
           ++ +K
Sbjct: 432 HKLMK 436