Pairwise Alignments

Query, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  187 bits (476), Expect = 6e-52
 Identities = 114/336 (33%), Positives = 186/336 (55%), Gaps = 40/336 (11%)

Query: 286 AEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKEL 345
           A ++  ++   R++  D+ L+I G++G GK    +ALH   +R+NGP VA+N  A+ ++L
Sbjct: 143 AAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRRNGPFVAINMAAIPRDL 202

Query: 346 VEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLP 405
           +E+ELFG+  GAFTGA ++   G+   A+ G LFLDEI D+P+DAQ+RLL VLQ      
Sbjct: 203 IESELFGHEKGAFTGAQNRS-TGRFEQAEGGTLFLDEIGDMPMDAQTRLLRVLQQGEYTT 261

Query: 406 VGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQR-QDRQALIH 464
           VG     + D++I+AAT+K+L+Q + QGLFR+DLYYRL+ + + LP  + R +D   L+ 
Sbjct: 262 VGGRTPIRTDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRLPPLRDRAEDIPDLVR 321

Query: 465 HI---HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIK------------------- 502
           H      +    G++   + ++ + AY WPGN+REL++LI+                   
Sbjct: 322 HFIQTGEKEGLEGKRFETEALEVMKAYAWPGNVRELENLIRRLMALYPQEVITREIIEQE 381

Query: 503 --------VASLMAEGEGVLTFN-----HLPTHLAQKLSHAAPTATEDDQQKDIKSTVEA 549
                       MA   G LT +     ++  + A       P    D   ++++  +  
Sbjct: 382 LQSDVPDSPLDKMAVRTGSLTISQAVEENMRDYFASFGDGLPPPGLYDRVLRELEYPL-- 439

Query: 550 SLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585
            +L    AT+GN  + + LLGL+RNT+ +K++ LG+
Sbjct: 440 -ILAALTATRGNQIKAADLLGLNRNTLRKKIRELGV 474