Pairwise Alignments

Query, 461 a.a., cryptochrome DASH from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., deoxyribodipyrimidine photolyase from Pseudomonas simiae WCS417

 Score =  106 bits (265), Expect = 1e-27
 Identities = 115/439 (26%), Positives = 182/439 (41%), Gaps = 47/439 (10%)

Query: 7   LYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFLNQTL 66
           L W   DLR++DN  L  ASQ+   +  +Y    ITP   +  Q       K  F  + L
Sbjct: 3   LIWLRTDLRLHDNTALAAASQR-GPIAAVYL---ITP---QQWQSHDDAPCKVDFWLRNL 55

Query: 67  ADLDHSLSTLGQKLWVTPLLPYQ----ALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
            DL  +L  L   L +     +      L  L  ++ +  ++V+   G  E +  A + +
Sbjct: 56  QDLSKTLGALNIPLLIRTAATWDQAPDVLSKLCRELSVESVHVNEEYGIHESRRDAAVSK 115

Query: 123 --DFSSVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQVET---ISLSAPMGYPHVLP 177
             +   V  H+           +          F+QFRK   T    +L   +  P    
Sbjct: 116 ALEADGVTFHRYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYTRLHSALPRMVAAPKAQA 175

Query: 178 PIE----------QGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRN 227
           P++          +G+  P     ++   + +  GE         +    + S YK+ R+
Sbjct: 176 PLKLKSDPVPNTVEGFAPP-----SDSLRALWPAGEDEARRRLDAFADQQI-SYYKDERD 229

Query: 228 GLDGMDYSTKFSPWLALGAVSPKT-IYAMLQRYEAVHGAND--STYWIFFELLWREYFYW 284
                  +++ S +LA G VSP+  ++A LQ       + D  +  WI  ELLWRE++  
Sbjct: 230 -FPAKPGTSQLSAYLAAGVVSPRQCLHAALQTNGGEFESGDLGAITWIN-ELLWREFYKH 287

Query: 285 YARRYGAKLFRFSGIGEKKPLTSFYAQR-----FLQWKHGETPFPIVNACMRQLNQTGYM 339
               Y     R S     +P T   A R        W+   T  PI++A MRQL +TG+M
Sbjct: 288 ILVGYP----RVSRHRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWM 343

Query: 340 SNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQF 398
            NR R +VA  L   L +DWR G  +F   L+D D+ +N G WQ+ +  G D     R F
Sbjct: 344 HNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIF 403

Query: 399 NLEKQAHTYDPKGEFVAKW 417
           +   Q+  +D +G F+  W
Sbjct: 404 SPLSQSEKFDAEGVFIKHW 422