Pairwise Alignments

Query, 585 a.a., transposase from Vibrio cholerae E7946 ATCC 55056

Subject, 589 a.a., DDE-type integrase/transposase/recombinase from Erwinia tracheiphila SCR3

 Score =  341 bits (875), Expect = 4e-98
 Identities = 195/578 (33%), Positives = 309/578 (53%), Gaps = 24/578 (4%)

Query: 1   MNALELERAQYLKRLMSDLDRSGRGQKGVIVQAAMDHLCISKSKLYQELTDLGWTSGRKT 60
           M+A   ER   + R   D   +G G +G I  AA   LC+S++ L ++L ++  T  RK 
Sbjct: 1   MSAALTERLVSVARAARD---AGHGNRGAIYDAACAELCMSRATLLRKLKEVSVTDKRKK 57

Query: 61  RADNGDLALTKEETELLSNMIRQSKRESGKALMTVRDAVDIALANGELTRH--------- 111
           R D G   LT++E  L+S  +R+S R++GK L ++ DAV     NG +T           
Sbjct: 58  RTDAGQSTLTRKEASLISATLRESTRKNGKRLYSIADAVKTLRTNGLITAGRMDEETGEF 117

Query: 112 --VSESTVLRAFKRFRVHPDQLDMMETTMSQRSLFPNHAWQFDVSICVLYYLRGG-KGLQ 168
             +SE T+ RA + + +HP+QLD    +    SL PNH W+ D S+C LYYL  G KGLQ
Sbjct: 118 FPLSEDTISRALRNYGLHPEQLDAPAPSSEMASLHPNHVWEIDASLCTLYYLSNGHKGLQ 177

Query: 169 VMSKDEFYKNKPKNLDRIVNERVLRYLATDHYSGAFFLRYYLAPGENTETITQFLLEAFC 228
           VM   +FYKNKP N+ RI ++RV  Y  TDH SG  ++ Y +   E+ E +   L+ A  
Sbjct: 178 VMDSAQFYKNKPANIARIASDRVWSYELTDHTSGWIYVEYVMG-AESGENLCSVLINAMQ 236

Query: 229 ERDTGELMYGVPQILIWDAGSANIAHQTRHMLDMLEVKHIAHTPGRPWAKGQVESTHNLV 288
           ER   ++++GVP+IL  D GSAN A  T++M   L ++ IAH P    A GQVE   +++
Sbjct: 237 ERGGADVLHGVPKILYLDPGSANTAGMTKNMCKSLGIELIAHKPHNARATGQVEKARDII 296

Query: 289 ERRFEGRLAFMTVQSIEELNRHAVQWSIGFQSLKEHSRHKNSRFGLWQTIRAEQLRLIKD 348
           ER+FE  L F  V S+EELN  A +W   F + + HSRH+ +R  +W  I AEQL+    
Sbjct: 297 ERKFEPGLKFQPVNSLEELNVKAARWRSHFNATEIHSRHRKTRTDIWLKISAEQLKKAPS 356

Query: 349 VNLVKSMMQQTKPEVRKVRPNELSISFAPKGYASMDYSLAHIPHLIAGDEVKVFANPYKA 408
           V + +  +    PE RKV  ++L + F        ++ ++ +P ++ G+++ +  NP+++
Sbjct: 357 VEVCRE-LAVAAPESRKV-TSKLRVPF-----RGAEFDVSTVPGVLVGEKLMITRNPWRS 409

Query: 409 PAIRVISVDDSGQEHTHEATPIERDAAGFNLLAPIIGAEHKSVRETDADHNRKRLDIQAW 468
              +V+   + G E       + ++  GF   A + G  +K++ ET A    K ++    
Sbjct: 410 DVAQVVLTGEDGHETFFLVEEVRKNEFGFAESAAVFGESYKALPETPAQTAAKEIEALVT 469

Query: 469 GTDNPRDIKKLRKGKVAAFDGRINPMADIEQQVVPSFMPRRGTVMSMEGQPLTEQKMSFI 528
           GTDN  D    RK K   F GR++P   I+   +P++MP+RG    + G  + ++ ++ +
Sbjct: 470 GTDNAADAAAARKAKALPFGGRLDPYKHIDDTTLPAYMPKRGQASDVRGPRIEQRPLTHV 529

Query: 529 GALNRLQRRLNPTKEELAVMR-KVLKQQYPDGMTDNEL 565
            A   L+ + +   +       + L  QYPDG+ +  L
Sbjct: 530 EAAKILREKFSACGQTWTPEHYRQLAAQYPDGVQETAL 567