Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score =  148 bits (373), Expect = 2e-40
 Identities = 94/317 (29%), Positives = 172/317 (54%), Gaps = 9/317 (2%)

Query: 7   ITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQ 66
           I  A L+L+ ++   A TT+K+ +  +  S +  +    A  +E+ + G  K+  + +  
Sbjct: 6   IAAACLSLALSSVAFAQTTMKISISTAQNSHQGVAIDTFAKEVEKRTGGRYKVQTFYNGS 65

Query: 67  LGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGV 126
           LG +R  ++ + LG  ++ ++  G +  ++P  + + +P++ +D  H R + +   GQ  
Sbjct: 66  LGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLDGPIGQ-- 123

Query: 127 RDEMLQKFN---WRALDTWYNGTRE-TTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSG 182
             +ML KF+   ++AL    NG R  T S R + + ED KGLK+R      ++   K  G
Sbjct: 124 --DMLTKFDAKGFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAYKGFG 181

Query: 183 ASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISEST 242
              TPM+F EV+ ALQ   VDGQENPLP I + KF +VQK+L++T H+ +  + +++++T
Sbjct: 182 IITTPMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVMNKAT 241

Query: 243 WQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVT-YPDLEPFREAMQP 301
           + KLS  DK     A ++   A+   V   +A+ V+  +++G+ V    D   F  A+ P
Sbjct: 242 FDKLSAADKQAFLDAAKEGTKANRARVDEDDAKGVADLRAKGMTVVDNVDKARFVAALAP 301

Query: 302 LYKEFDSNIGQPIVSKL 318
           +  +F+ + G+  + K+
Sbjct: 302 VNAQFEKDFGKANLDKI 318