Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., TRAP-type transport system, periplasmic component from Variovorax sp. SCN45

 Score =  141 bits (355), Expect = 3e-38
 Identities = 98/323 (30%), Positives = 160/323 (49%), Gaps = 18/323 (5%)

Query: 4   INKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNS-----------AKMLADTLEEM 52
           IN+ T+  L  +AAAS  A    +   Q +  + +Y +           AK +AD +   
Sbjct: 3   INRRTV--LRTAAAASTLALPLRQALAQKNAFNYKYANNLPVSHPMNLRAKEMADAIRAE 60

Query: 53  SQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFD 112
           + G++ + ++P+ QLG D  +L QL  G ++        +   +P A    + +   D+ 
Sbjct: 61  TNGQVDIQIFPNNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFPDYA 120

Query: 113 HLRRMFESDFGQGVRDEMLQKFNWRALDT-WYNGTRE-TTSNRPLNSIEDFKGLKLRVPN 170
            + +  + D G  +R + + K N  A+D  W NG R+ T+S++P+ S  D KG K+RVP 
Sbjct: 121 SVWKAMDGDLGSHIRTQ-IAKANIVAMDKIWDNGFRQITSSSKPIASPADLKGFKIRVPV 179

Query: 171 AKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHI 230
           +    +  K   ASPT ++F+EVY ALQT  VDGQENPL  I T K YEVQK  +M++H+
Sbjct: 180 SPLWTSMFKALEASPTSINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSMSNHM 239

Query: 231 VNDQMVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYP 290
            +    + +   W K+    + I+ K +   G      V    A L     ++G+ +  P
Sbjct: 240 WDGFWFLANRRAWDKMPADLQAIVAKHINAAGMRERADVAELNANLQKELSAKGMQINQP 299

Query: 291 DLEPFREAMQP--LYKEFDSNIG 311
           D   FR+ ++    Y E+ S  G
Sbjct: 300 DPAAFRDQLRKAGFYAEWKSKYG 322