Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score =  113 bits (283), Expect = 6e-30
 Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 5/277 (1%)

Query: 43  KMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAV 102
           K  A+ L   S G++K+  YP++QLG++      L  G   ++      +   +     V
Sbjct: 45  KRFAELLAAKSGGKMKVQEYPASQLGNEMQQQSALQGGVQQMSAPATTSLAGIVKEFGLV 104

Query: 103 MLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETT-SNRPLNSIEDF 161
             P+   +F     + +   GQ +  ++ +K    AL  W  G R  T S RP+   ED 
Sbjct: 105 DFPFSVNNFAQADALLDGPLGQALIAKLPEK-GLVALGYWDLGFRNVTNSKRPIAKPEDL 163

Query: 162 KGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQ 221
           +GLK+RV      L   K   A+P PM F+E+Y AL++ AVDGQENP   I + KF+EVQ
Sbjct: 164 EGLKIRVIPNPVFLETFKSFKANPVPMPFAELYGALESKAVDGQENPYSVILSNKFFEVQ 223

Query: 222 KNLAMTHHIVNDQMVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFK 281
           K ++ T+H+    +V++S+  W  LS  ++ ++ +A  +      Q  +    + +   +
Sbjct: 224 KFVSATNHVYAANIVLVSKKFWDSLSAAEQKMMNEAADEARGYQRQVSRAAAQKAIGDLQ 283

Query: 282 SEGI---NVTYPDLEPFREAMQPLYKEFDSNIGQPIV 315
           ++G     V+  +    RE  +P   +F S     IV
Sbjct: 284 AKGAQFNEVSAAEQVRMREIAKPAIDKFASQYDAGIV 320