Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  127 bits (318), Expect = 5e-34
 Identities = 89/326 (27%), Positives = 161/326 (49%), Gaps = 16/326 (4%)

Query: 3   TINKITIAILTLSAAASVNAATT---------LKMGMQASVGSVEYNSAKMLADTLEEMS 53
           T+ + T+   T +AA +   A +         ++ G   +  S +  + K+ A+ +E+ S
Sbjct: 2   TLFRRTLIAATAAAALATPFAASWAQDIKPRIIRFGYGLNEISNQGRATKLFAEEVEKAS 61

Query: 54  QGEIKLALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVM-LPYVAKDFD 112
            G++K+    +A LG D  M Q L  G  ++       + + I +  A+   P++  +  
Sbjct: 62  GGKMKIRAIGAAALGSDVQMQQALIGGAQEMMVGSTATL-VGITKEMAIWDTPFLFDNAK 120

Query: 113 HLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSN-RPLNSIEDFKGLKLRVPNA 171
               + +   GQ V D++ +K     L  W NG R  T+N R +  +ED  G+KLRV   
Sbjct: 121 EADVVLDGPVGQKVMDKLQEK-GLVGLVYWENGFRNLTNNKRAVTKLEDMDGIKLRVMQN 179

Query: 172 KQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIV 231
              ++  K  GA+  P+ FSE++ AL+T  VDGQENP  TI + KFYEVQK L +T+H+ 
Sbjct: 180 NVFIDSFKTLGANAVPLPFSELFTALETKTVDGQENPYNTILSSKFYEVQKYLTVTNHVY 239

Query: 232 NDQMVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTY-- 289
           +  +V++S+  W  LS  +  ++  A +K  D   Q  + +  + ++  K +G+ +    
Sbjct: 240 SPWIVLVSKKYWDGLSKDEHKVLLDAAKKSRDFERQDTRAEADKALADLKGKGMQINQLS 299

Query: 290 -PDLEPFREAMQPLYKEFDSNIGQPI 314
             +    RE +  +     +N+G+ +
Sbjct: 300 PAEANRMREKLAGVNSGIATNVGEDL 325