Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  152 bits (385), Expect = 8e-42
 Identities = 99/320 (30%), Positives = 158/320 (49%), Gaps = 6/320 (1%)

Query: 6   KITIAILTLSAAASVNAAT-TLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPS 64
           K  +A L ++A  +V+A   T+K   Q   G       +  A+ +   S G+IK+ L+P 
Sbjct: 7   KTLVAALAVTAFGAVHAQDKTIKFATQNPKGHPIVMGMEKFAELVAAKSGGKIKVNLFPG 66

Query: 65  AQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQ 124
             LG D+A +  +  G L++     G     +        P++  +      + +  FG+
Sbjct: 67  GTLGSDQANVSAIQGGTLEMASMNSGIFASQVKEFAIYDFPFMFANTKEADAVVDGPFGK 126

Query: 125 GVRDEMLQKFNWRALDTWYNGTRE-TTSNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSGA 183
            + D++ +K     L  +  G R  T S RP+  +ED +GLKLRV     N+++ K  GA
Sbjct: 127 KLHDKLQEK-GLIGLAYYELGFRNITNSKRPITKLEDLEGLKLRVIPNPINVDWVKALGA 185

Query: 184 SPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTW 243
           +PTP+ F EVY AL+  A+DGQENP+  I   KFYEVQK + +++H  N Q VIIS+  W
Sbjct: 186 NPTPLPFPEVYAALEQKAIDGQENPVTVINANKFYEVQKYVVLSNHQYNPQSVIISKKFW 245

Query: 244 QKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTY---PDLEPFREAMQ 300
             L    K I+  A Q+      +  + Q A  +   K  G+ VT     + +  R+ ++
Sbjct: 246 DTLDAAQKKIVADAAQESAKYQREQARGQVAAALDNMKKGGMQVTELSPAETDKLRDKLR 305

Query: 301 PLYKEFDSNIGQPIVSKLAA 320
           P+  +F   +GQ  V  L A
Sbjct: 306 PVIAKFAVAVGQETVQSLQA 325