Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  133 bits (335), Expect = 5e-36
 Identities = 89/318 (27%), Positives = 156/318 (49%), Gaps = 6/318 (1%)

Query: 7   ITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQ 66
           I  A +T+ A A   A +       A    + +   KM      + S G++KL  Y    
Sbjct: 10  IAAAAVTVPAHAQFEARSLRVSSGVAKGHPISFGITKM-TQCAADKSGGKLKLVTYYDGA 68

Query: 67  LGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGV 126
           LG+D    QQ+  G LD+       +   IP+     LP++  +     ++ +   G+  
Sbjct: 69  LGNDTTASQQVRTGSLDMVLTSTAPLVGAIPQLAVFDLPFLFSNEREADQLLDGPVGKSF 128

Query: 127 RDEMLQKFNWRALDTWYNGTRETT-SNRPLNSIEDFKGLKLRVPNAKQNLNYAKLSGASP 185
             +  +      L  W NG R  T S R +   ED +G+K+RV   K  L+     G++P
Sbjct: 129 APKY-EAAGLVNLAYWENGFRNVTNSKRAVGKWEDLQGVKMRVMQNKVFLDTFSALGSNP 187

Query: 186 TPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISESTWQK 245
           TP++FSEVY AL+T  VDGQENP+  I+ MKFYEVQK L++T H  +   V+IS+  +  
Sbjct: 188 TPLAFSEVYSALETRTVDGQENPIALIENMKFYEVQKYLSLTRHAYSPLAVLISKKKYDT 247

Query: 246 LSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGI---NVTYPDLEPFREAMQPL 302
           LS  ++ ++Q+      +   +  +  +A++++  K  G+    V+  +L+  R+ ++ +
Sbjct: 248 LSPQEQAVMQECAVTGQEESRRVGRAADADVIAKLKKNGMQVNEVSPAELQRMRDKVKDV 307

Query: 303 YKEFDSNIGQPIVSKLAA 320
           Y      +G+ +++ + A
Sbjct: 308 YASQAKVVGEDVMTAVNA 325