Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., TRAP transporter substrate-binding protein from Pantoea agglomerans CFBP13505 P0401

 Score =  150 bits (378), Expect = 5e-41
 Identities = 87/320 (27%), Positives = 159/320 (49%), Gaps = 6/320 (1%)

Query: 2   KTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLAL 61
           KT     +A + +SA A+   A  +K+      G     + + + D L++ + G +++ L
Sbjct: 5   KTCLACALAAMMMSATAT---AQVIKVAEVQPAGYPTVVALQHMGDKLKQATDGRLEMKL 61

Query: 62  YPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESD 121
           Y    LGD+   LQQ+ LG +D+       +    P    + LPY+ +D DH+ ++ + +
Sbjct: 62  YAGGVLGDEDQTLQQVQLGAIDMIRVSLAPVTSIAPETSVLTLPYIFRDIDHMHKVLDGE 121

Query: 122 FGQGVRDEMLQKFNWRALDTWYN--GTRETTSNRPLNSIEDFKGLKLRVPNAKQNLNYAK 179
            G+ + D+  +  N R +   +   G R   + +PL   ED KG+K+RV N+  +L   K
Sbjct: 122 IGREIADKFDKDPNARMVFLGWTDAGERNMITKKPLAKPEDLKGMKIRVQNSAISLATLK 181

Query: 180 LSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIIS 239
             GA+P  M  SEV+ A+QT  VDG EN  PT     +  V K   ++ H +  +M++ S
Sbjct: 182 AMGANPVAMGVSEVFSAMQTGVVDGTENNPPTFVAHNYMPVAKYYTLSGHFIQPEMILFS 241

Query: 240 ESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAM 299
           +  W +L   D+ +++K  ++  D   Q   T   + ++  K+ G+     D + F +A 
Sbjct: 242 KRAWDRLKPEDQALLKKLGKEAQDEERQLWATYTEQSIAKMKAGGVTFQQTDRDYFVKAT 301

Query: 300 QPLYKEFDSNIGQPIVSKLA 319
           QP+  +F     Q +++++A
Sbjct: 302 QPVRDQFGGKY-QDLMTRIA 320