Pairwise Alignments

Query, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  103 bits (258), Expect = 4e-27
 Identities = 85/311 (27%), Positives = 147/311 (47%), Gaps = 13/311 (4%)

Query: 1   MKTINKITIAILTLSAAASV--NAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIK 58
           MK    I +A L L +  S   +  T L++    +   V+ ++   L   +EE + G+IK
Sbjct: 1   MKQPGFIRLATLALLSTLSFFSHGETILRLAYAENSQPVK-DALHFLGQQVEEKTGGDIK 59

Query: 59  LALYPSAQLGDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMF 118
           +  +P  QLG +R +++   +G +DIT    G M  + P      LPY+    +   R+ 
Sbjct: 60  VQYFPDGQLGGERELVELTQVGVVDITKVSSGLMESFSPEYGVFSLPYLFATVEEYYRVM 119

Query: 119 ESDFGQGVRDEMLQKFNWRALDT--WYN-GTRET-TSNRPLNSIEDFKGLKLRVPNAKQN 174
           ++     V + + Q    +      WY+ G R    S  P+  IED +G K+RV  ++  
Sbjct: 120 DNP---QVMEPVYQSTAAQGFIGVGWYDSGARNFYMSKAPIKRIEDLRGKKIRVMQSETA 176

Query: 175 LNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQ 234
           +   KL GASP  MS +EVY +LQ   +DG EN    +   +  EV +      H     
Sbjct: 177 IQTLKLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIARHGEVARYYTYDMHTRIPD 236

Query: 235 MVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLE- 293
           ++++S  T +KL+   + I++ A+ K      +    +E E       +  NV + +++ 
Sbjct: 237 ILLMSTLTLEKLTPEQQRIVEAAI-KASIEFEKAAWDKEIEKTRLAAVKDFNVEFYEIDK 295

Query: 294 -PFREAMQPLY 303
            PF+EA+QP+Y
Sbjct: 296 KPFQEAVQPIY 306