Pairwise Alignments

Query, 173 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 194 a.a., D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) from Pseudomonas putida KT2440

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 24  ALLAVLTWQIGTRWLLNDPSLWSEELARLLFMYMCLVGCAIAIKRSSHVNITFFSDKLPE 83
           A+  ++ W I  R++L   S W E ++ LL +    VG A + +  +H+ +   +D+LP 
Sbjct: 45  AMTLIIPWGIFARYVLGTGSSWPEPVSILLMVVFTFVGAAASYRAGAHMAVGMITDRLPP 104

Query: 84  KARLSLVLSLEIAVLVSIGAIIVLGYQHAQRNAFFELITLGISSSWMNYS-LPVGGVFMV 142
             R  + L +++ ++V    +   G +         L +L      M Y+ +PVGGV   
Sbjct: 105 LQRQLVALLVQLLMIVVCVFMTYYGTRLCITTWNQSLASLPGVRVGMTYAPIPVGGV--- 161

Query: 143 FRQLEKIFNLMKLLLGVSSSASLIDQQVTE 172
              L  +F L KLLLG  S+  ++   + E
Sbjct: 162 ---LTLVFVLEKLLLGDQSNRKVVRFDLVE 188