Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Sialic acid TRAP transporter large permease protein SiaM from Xanthobacter sp. DMC5

 Score =  357 bits (916), Expect = e-103
 Identities = 188/465 (40%), Positives = 285/465 (61%), Gaps = 43/465 (9%)

Query: 5   IFGWLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTG 64
           I G+L L+  G+PV  ++   +L +++++ +      AQ+M+ G+++F LLAVPFF+L G
Sbjct: 5   IGGFLFLMLCGVPVAIAMAGASLVYILVSGTVPDVVIAQRMIAGVESFPLLAVPFFILAG 64

Query: 65  HLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSM 124
           +LMN AG+T RI+ FA +LVG + G LG VNI+ S++FSGMSG+A+ADA GLG +EIK+M
Sbjct: 65  NLMNIAGVTGRIYAFAVALVGWMRGGLGQVNIIGSVIFSGMSGTAIADAAGLGTIEIKAM 124

Query: 125 RDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALM 184
           +D  Y  +FA G+TAAS  +GP++PPS+P VIYG+++N SIGALFL G +PG++  + +M
Sbjct: 125 KDHGYSTEFAVGVTAASATLGPIIPPSLPFVIYGMLANVSIGALFLGGVVPGVVMTLLMM 184

Query: 185 VMSYFICKKRGYMTLPKASRREQFKSLKE------------------------------- 213
               +   + G+ +    + R+   +  E                               
Sbjct: 185 GTVAYFAHRNGWGSDAAFNWRQLLSASIEVVIVLAFPAAVYVMIEVGLSTNQAVLIALAV 244

Query: 214 -----------AFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALFLGTVVYNTLTLQGF 262
                      A ++L+TPVI+IGG+  G FTPTEAA  + +++LFLG V Y ++TL+  
Sbjct: 245 LIALDWYFDFSAVMALMTPVILIGGMTLGWFTPTEAAVAAVIWSLFLGLVRYRSMTLKTL 304

Query: 263 IEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLLLL 322
            +   +T+ TTA V  +V   ++F W++   Q  QML+D  L  + N  V L L NLL+L
Sbjct: 305 AKATFDTIETTASVLFIVTAASIFAWLLTASQAAQMLSDAILGFTQNKWVFLALANLLIL 364

Query: 323 FLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRV 382
           F+G FI+++A + +LVP L+P+   +GIDP+HFG++  LNLMIG+L PP+GM L+V++RV
Sbjct: 365 FVGCFIDTIAAITILVPILLPIVLKLGIDPIHFGLIMTLNLMIGLLHPPLGMVLFVLARV 424

Query: 383 GDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPELFLGYGQ 427
             +     T  +LP LVPL I L  +   P  TL LP   +G G+
Sbjct: 425 ARLSVERTTMAILPWLVPLMIALLAITYIPGLTLWLPHA-MGLGR 468