Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., Sialic acid TRAP transporter permease protein SiaT from Xanthobacter sp. DMC5

 Score =  189 bits (480), Expect = 2e-52
 Identities = 115/407 (28%), Positives = 199/407 (48%), Gaps = 4/407 (0%)

Query: 12  LFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMNSAG 71
           +FAG+P+ FS     + +L  T +T +     +M  G+ +  LL+VP FV  G L+   G
Sbjct: 240 VFAGVPIAFSFGLATVGYLTFTTTTPLAVVVGRMDEGMSHLILLSVPLFVFLGLLIEMTG 299

Query: 72  ITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSM--RDAKY 129
           +   +  F  SL+GH+ G L +V I A  L SG+SGS  AD   +  +    M  R AK 
Sbjct: 300 MARALVGFLASLLGHVRGGLSYVLIGAMYLVSGISGSKAADMAAVTPVLFPEMVKRGAKK 359

Query: 130 HDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSYF 189
            D  A  L AA+      +PPS+ L+  G V+  SI ALF  G +P L+  +AL ++  +
Sbjct: 360 GDLVA--LLAATGAQTETIPPSLVLLTIGSVTGVSIAALFTGGLLPALVLGLALCLLVRY 417

Query: 190 ICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALFL 249
             +      + + S R+   S   A  ++  P +I G +  G  T TE + +  +Y++ +
Sbjct: 418 RYRNDDLSNVKRVSARDILWSAGIALPAIALPFVIRGAVMEGIATATEVSTIGIIYSVVV 477

Query: 250 GTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDN 309
           G +VY        + ++  T   +  + L++   T   W + +    Q LA     +   
Sbjct: 478 GLLVYRQFEWSRVVPMMISTAALSGAILLIIGAATGMAWALTQSGFSQNLAKVMSGLPGG 537

Query: 310 PLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILT 369
               +++  L  + LG+ +E +  ++L  P L P+A  +GI  VH+ ++ IL + IG+  
Sbjct: 538 AATFMVVSILAFIILGSVLEGIPSIVLFGPLLFPIARQMGIHEVHYAMVVILAMGIGLFA 597

Query: 370 PPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTL 416
           PP G+  Y  + +GD+      + ++  ++ L I LA+VA  P  ++
Sbjct: 598 PPFGVGYYCATAIGDVNPDEGMKPIVGYMLVLLIALAVVAAVPWISI 644