Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Xanthobacter sp. DMC5

 Score =  206 bits (525), Expect = 9e-58
 Identities = 124/450 (27%), Positives = 240/450 (53%), Gaps = 27/450 (6%)

Query: 1   MVGSIFGW--LGLLFAGMPVGFSLIFVALAFLI-LTNSTGINFAAQQMLGGIDNFTLLAV 57
           +VG ++G   LG +F GMP+ F+L  VA+ F++    +  ++   Q +   + + TLL++
Sbjct: 5   LVGLLYGGATLGTMFLGMPIAFALGAVAVLFMVGFMPAASLDTVTQNVYEEMASITLLSI 64

Query: 58  PFFVLTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLG 117
           P F+L G  +  +   + +++   + +  I G LG  N+ A  LF+ M+GS+ A    +G
Sbjct: 65  PLFILKGAAIGKSRAGQDLYSALHAWMHKIPGGLGIANVFACALFAAMAGSSPATCSAIG 124

Query: 118 QLEIKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGL 177
              I  MR   Y   FA GL AA   +G L+PPS+ +++Y V +  S+G LFLAG  PGL
Sbjct: 125 SAGIPEMRKRGYSGAFAAGLIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGLGPGL 184

Query: 178 LCCIALMVMSYFICK-KRGYMTLPKA----------------SRREQFKSLKEA--FLSL 218
           L  + ++   Y + + ++ Y    KA                + R++F +L     F+ L
Sbjct: 185 L--LVMLFAGYAMVRFRQEYAAAKKAYAETGARSALLHEENLTLRDRFAALPRVLPFVVL 242

Query: 219 LTPVIIIGGIFSGKFTPTEAAAVSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVAL 278
           LT V++   ++ G  TP+E A +  + AL L  ++Y   T +    IL  T+  + ++ +
Sbjct: 243 LTGVMV--ALYGGYATPSETAGLGGVLALALIALIYGVWTPKDLSPILTSTIRESTMLMM 300

Query: 279 MVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLV 338
           ++    ++ ++++   + Q  A   + ++ +  +LL  I +L++ LG F+  ++++L+  
Sbjct: 301 IIGMSLLYSYVMSYLHISQAAAQAIVALNLSKWLLLATILVLVVVLGFFLPPVSIILMTA 360

Query: 339 PFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRVG-DIPFHTLTRGVLPL 397
           P ++P   A G D + FGV+  + + +G++ PP+G+ ++V+  +  DIP   +  G +P 
Sbjct: 361 PIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNIAPDIPLKDVIWGTVPF 420

Query: 398 LVPLFIVLALVAVFPQFTLLLPELFLGYGQ 427
           ++ + + + L+ +FPQ     P+L +G G+
Sbjct: 421 VLLMLLAVILLCLFPQIATGFPDLVMGKGR 450