Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., C4-dicarboxylate TRAP transporter large permease protein DctM from Xanthobacter sp. DMC5

 Score =  291 bits (745), Expect = 3e-83
 Identities = 161/414 (38%), Positives = 237/414 (57%), Gaps = 3/414 (0%)

Query: 11  LLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMNSA 70
           LL  G PV F L   +LA ++  +   +    QQ+  G++ F++LA+PFF+  G LM   
Sbjct: 13  LLLVGTPVAFCLGLASLATVLYLDLPPV-VVFQQLNSGMNAFSMLAIPFFIFAGDLMMRG 71

Query: 71  GITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKYH 130
           GI +R+   A SLVGH+ G LG VN++AS LF G+SGSA+ADA  +G + I  M    Y 
Sbjct: 72  GIADRLIGMAASLVGHLRGGLGQVNVVASTLFGGISGSAVADASAIGGIMIPQMARHGYA 131

Query: 131 DDFAGGLTAASCIIGPLVPPSVPLVIYGVVSN--TSIGALFLAGAIPGLLCCIALMVMSY 188
            D+A  +T  S II  ++PPS  ++IY + +    SI  LF AG +PGLL   A+M+ +Y
Sbjct: 132 KDYAVNVTVNSAIIALMIPPSHNMIIYSLSAGGTISIADLFTAGIMPGLLLAAAMMITAY 191

Query: 189 FICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALF 248
            + + RGY            +S+  A   ++   II GG+ SG FT TE++ ++ +YAL 
Sbjct: 192 VVARNRGYPAGTFPGWHAVLRSVVAAIPGIMLIGIIFGGVRSGIFTATESSCIAVIYALL 251

Query: 249 LGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISD 308
           + T+VY  +    F+E     V TTA+V L++     FGW++A  Q+P+   +    IS 
Sbjct: 252 VTTLVYREMHWADFVEATLGAVRTTAMVLLVIGTAASFGWLMAFLQVPKATIEMMQAISS 311

Query: 309 NPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGIL 368
           NP V+LLLIN++LL LGTF++   ++++  P  +P+  A GIDPVHFGV+ ILN  IG+ 
Sbjct: 312 NPYVILLLINIILLILGTFMDMAPMIIICTPIFLPLVKAFGIDPVHFGVILILNAGIGLN 371

Query: 369 TPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPELF 422
           TPP+G  L+V   VG I      + + P       VL +V   P  +L LP  F
Sbjct: 372 TPPVGSVLFVGCAVGKITIGEAMKTIWPFFGASIAVLMIVTYVPAVSLWLPAAF 425