Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  287 bits (734), Expect = 5e-82
 Identities = 159/420 (37%), Positives = 242/420 (57%), Gaps = 7/420 (1%)

Query: 8   WLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQ--QMLGGIDNFTLLAVPFFVLTGH 65
           ++ L+  GMPV ++L    L+ LI      I F A   Q+ GG++ F+L+A+PFFVL G 
Sbjct: 10  FIALILIGMPVAYAL---GLSALIGAWWIDIPFQALMIQVAGGVNKFSLMAIPFFVLAGA 66

Query: 66  LMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMR 125
           +M   G++ R+  FA  LVG + G L  VNIMAS  F  +SGS++AD   +G + I  M 
Sbjct: 67  IMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLIPEME 126

Query: 126 DAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVS--NTSIGALFLAGAIPGLLCCIAL 183
              Y  +FA  +T +  +   L PPS   V+Y + +  + SI +LF+AG +PGLL    L
Sbjct: 127 RRGYPREFATAVTVSGSVQALLTPPSHNSVLYSLAAGGSVSIASLFMAGVVPGLLMSACL 186

Query: 184 MVMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSS 243
           MV+     KKR Y        ++  K   +A   L+  VII+GGI SG FT TE+AA++ 
Sbjct: 187 MVLCLIFAKKRNYPKGEVIPLKQALKICADALWGLMAMVIILGGILSGIFTATESAAIAV 246

Query: 244 LYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYF 303
           L+A F+   +Y         +++  TV T ++V +++     FG+I+   Q+P  +   F
Sbjct: 247 LWAFFVTMFIYRDYKWSELPKLMHRTVRTISIVMILIAFAASFGYIMTLMQIPAKITTLF 306

Query: 304 LTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNL 363
           LT+SDN  V+L+ IN +LL LGT ++   L+L+L P L+PV   +G+DPVHFG++ ++NL
Sbjct: 307 LTLSDNRYVILMCINAMLLLLGTVMDMAPLILILTPILLPVVLGIGVDPVHFGMIMLVNL 366

Query: 364 MIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPELFL 423
            IG++TPP+G  L+V + VG +      + +LP    LF+VL  V   P  +L LP + L
Sbjct: 367 GIGLITPPVGAVLFVGAAVGKVSIEKTVKALLPFYGVLFLVLMAVTYIPALSLWLPSVVL 426