Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  277 bits (708), Expect = 5e-79
 Identities = 140/401 (34%), Positives = 239/401 (59%), Gaps = 2/401 (0%)

Query: 23  IFVALAFLILTNSTGINF--AAQQMLGGIDNFTLLAVPFFVLTGHLMNSAGITERIFNFA 80
           + + LA ++    T  N   + ++M   I+ F L A+PFF+L G+LM + GI+ R+  FA
Sbjct: 21  VSIGLASILGIQVTNANMLISVKEMFNSINKFPLAAIPFFILAGNLMETGGISRRLVEFA 80

Query: 81  KSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKYHDDFAGGLTAA 140
           KS+VG + G L    ++  ++F+ +SGS++A    +G + I ++    Y   +A  L A 
Sbjct: 81  KSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIGAILIPALIKHGYPTSYAAALQAT 140

Query: 141 SCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSYFICKKRGYMTLP 200
           S  +G ++PPS+P+++YGV +  SIG LF+AG  PG+L  +ALM+  +  CK +G+    
Sbjct: 141 SAELGVIIPPSIPMILYGVSAEVSIGELFIAGFGPGILISLALMLFVWVYCKWKGWGKND 200

Query: 201 KASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYALFLGTVVYNTLTLQ 260
              R    ++L +A  +LL PVII+GGI+ G FTPTEA+AV+  YAL +G V+Y  + L+
Sbjct: 201 GEGRMPFGRALWQAGWALLMPVIILGGIYGGVFTPTEASAVAVFYALVVGMVIYREIKLK 260

Query: 261 GFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLL 320
               IL+++V ++AV+  ++    +F +++ R  +P  +  +   +  +P + LL +N  
Sbjct: 261 DLYVILRKSVMSSAVIMFIIANAGLFAFLITRAGVPDAIGHWLQQVLQSPAMFLLGVNAA 320

Query: 321 LLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVS 380
           L  +G FIE+ A +++L P L PVA   GIDPVHFG++ ++NL +G++TPP G+ L+   
Sbjct: 321 LFVIGMFIETSAAIIVLAPILAPVAVHFGIDPVHFGLIMVVNLALGMITPPFGVNLFAAC 380

Query: 381 RVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPEL 421
            V  I    + R ++P ++ +   L ++   P  +L L +L
Sbjct: 381 TVARISLDRIVRHLVPFVLVIMACLMVITYVPWVSLALRDL 421