Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  237 bits (604), Expect = 6e-67
 Identities = 141/421 (33%), Positives = 227/421 (53%), Gaps = 7/421 (1%)

Query: 11  LLFAGMPVGFSLIFVALAFLILTNST----GINFAAQQMLGGIDNFTLLAVPFFVLTGHL 66
           ++  G+P+G +L     A + L NS     G+    Q    G+  + LLA+P FVL G +
Sbjct: 13  MMLVGVPIGAALGLAGAACIALANSDAQWFGLLAVPQNFYAGLGKYPLLAIPMFVLVGSI 72

Query: 67  MNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRD 126
            + +G+  R+ NFA ++VG   G L  V I  ++   G+SGS  A+A  +G + I +M  
Sbjct: 73  FDRSGVALRLVNFAIAIVGRGPGMLPLVAIAVAMFLGGISGSGPANAAAVGAVMIAAMSR 132

Query: 127 AKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGV-VSNTSIGALFLAGAIPGLLCCIALMV 185
           A Y   F+  +  A+     L+PPSV  ++Y V V   S+ ALF AG +PG+L  +ALM+
Sbjct: 133 AGYPAAFSASVVGAAAATDILIPPSVAFIVYSVLVPGASVPALFAAGMVPGVLAGLALMI 192

Query: 186 MSYFICKKRGYMTLPKASRREQF-KSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSL 244
            +  + +K     L     R  F KS +EA   L  PV+I+GG+ +G FTPTEAA V+  
Sbjct: 193 PAVLLARKHKMGALEATLPRPPFWKSFREATWGLAAPVLILGGMRAGWFTPTEAAVVAVF 252

Query: 245 YALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFL 304
           Y LF+G  V+ T+ ++    IL+E+   +AV+ L+V    +F + ++   +   +    +
Sbjct: 253 YGLFVGMFVHRTIKVRDLFVILRESGELSAVILLVVSLAGIFAYSLSTLGVIDPVTRAIV 312

Query: 305 TISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLM 364
                   +L L+ LLL+ +G F++ +++ L+ VP L+P+      DPV FGV+  L + 
Sbjct: 313 NSGLGEYGILALLILLLITVGMFLDGVSIFLIFVPLLLPIVQYYKWDPVWFGVILTLKVA 372

Query: 365 IGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPELFLG 424
           +G  TPP+ + L V  R+  +      R V  +L  +F+V+ LV +FP+  L LP   LG
Sbjct: 373 LGQFTPPLAVNLMVSCRIAKVRMEETVRWVGWMLFSMFVVMVLVIIFPELALWLPRK-LG 431

Query: 425 Y 425
           Y
Sbjct: 432 Y 432