Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  238 bits (606), Expect = 4e-67
 Identities = 142/437 (32%), Positives = 229/437 (52%), Gaps = 26/437 (5%)

Query: 12  LFAGMPVGFSLIFVALAFLILTNSTGINF--AAQQMLGGIDNFTLLAVPFFVLTGHLMNS 69
           L  GMPV F+   + L+ L      G+ F  A Q M+ G++ F+ LA+PFF+ +G LM  
Sbjct: 14  LLLGMPVAFA---IGLSCLATFAYEGLPFETAIQMMVSGMNVFSFLAIPFFIFSGELMLH 70

Query: 70  AGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAKY 129
            GI ++I  FA+SLVGH  G LG  N++AS LF G+SGS +AD   +G + I  M+   Y
Sbjct: 71  GGIADKIVAFARSLVGHWKGGLGLANVVASTLFGGVSGSPVADTSAMGGVMIPIMKREGY 130

Query: 130 HDDFAGGLTAASCIIGPLVPPSVPLVIYG-------------VVSNTSIGALFLAGAIPG 176
              +A  +T  + + G L+P S  ++IY              ++   SIG L  AG IP 
Sbjct: 131 SAAYAVNVTTHASLSGALMPTSHNMIIYAFAAQAAVGTIDGHIIKGVSIGDLMFAGLIPV 190

Query: 177 LLCCIALMVMSYFICKKRGYMTLPKASRR-EQF-------KSLKEAFLSLLTPVIIIGGI 228
               + ++V +Y+   K GY      S   E+F       K+   A   L+  VII+  +
Sbjct: 191 FWIMVCMLVAAYWQAAKHGYPKRTDGSTMLERFPGWGMVGKTFLAAIPGLMVIVIILVCV 250

Query: 229 FSGKFTPTEAAAVSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGW 288
             G  T TEAAA++  Y+L L  V Y T+T +   + L +   TT V+ L++    +  +
Sbjct: 251 MQGVATATEAAAIAVTYSLLLTVVAYRTMTREKLFKSLAKASKTTGVILLLIGVSNMLRY 310

Query: 289 IVAREQLPQMLADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAV 348
            +A  ++P  +    L  + +P ++LL IN++ +FLG F++  A +L+  P  +P+A  +
Sbjct: 311 QMAYLEIPDAIETVLLAATTSPWLMLLYINIIQIFLGIFLDMAAHILITTPLFLPLAIQM 370

Query: 349 GIDPVHFGVMAILNLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALV 408
           G+ PV FG+M +LN  +G++ PP+G   ++   +G I     T+   P  + +FI + LV
Sbjct: 371 GVGPVQFGMMLLLNCALGLVHPPVGTVQFIGCAIGKISIGEATKTAWPYYLAIFIAITLV 430

Query: 409 AVFPQFTLLLPELFLGY 425
              P F+  LP +  G+
Sbjct: 431 TYVPAFSTWLPTMLTGH 447