Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Variovorax sp. SCN45

 Score =  224 bits (572), Expect = 3e-63
 Identities = 131/415 (31%), Positives = 224/415 (53%), Gaps = 8/415 (1%)

Query: 11  LLFAGMPVGFSLIFVALA--FLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLMN 68
           L+   +PVG ++  V +     ++     +    Q  +  + ++T   +P F+L G L++
Sbjct: 17  LMLLRVPVGMAMGLVGVTGYSYLVGPGPALKLVGQTSMRTVTDYTFGVIPMFMLMGALVS 76

Query: 69  SAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAK 128
            +G++  +F  A S++GH+ G LG   ++A   F+ + GS++A A     +    MR   
Sbjct: 77  VSGVSRELFKAANSMIGHLRGGLGVATVVACGGFAAICGSSVATAATFSAVAYPEMRRFN 136

Query: 129 YHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVMSY 188
           Y   F+ G+ AA   +G ++PPS  L +Y +++   IG LF+AG +PG+L  +A+ VM+ 
Sbjct: 137 YPQSFSTGVIAAGGTLGAILPPSTVLAVYAILTQQDIGKLFMAGIVPGIL-AMAMYVMTI 195

Query: 189 FICKKRGYMTLPKASRR---EQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLY 245
            I  K     LP    +   E+ K LK  +  L+  V +IGG++ G FTPTEA  V +  
Sbjct: 196 AIIVKLRPDWLPGGEIKPWSERVKDLKNVWAPLVLFVFVIGGLYGGFFTPTEAGGVGASG 255

Query: 246 ALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLT 305
           A  LG +V   L      E L     T A V  +++G  +FG+ +   Q PQ L ++   
Sbjct: 256 AFILG-LVRRKLDGPKIREALLSATRTAAAVFTVLIGALLFGYFLTITQSPQKLTEFLTG 314

Query: 306 ISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMI 365
           +      +L LI L+ L LG  ++++A+++L VP + PV   +G DP+ FGV+ ++ + +
Sbjct: 315 LGIGRYGVLALIMLMYLVLGCLMDAMAMIILTVPIIYPVIVHLGFDPIWFGVIIVMTVEL 374

Query: 366 GILTPPMGMALYVV-SRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLP 419
           G++ PP+GM ++V+ S V D+ F T+ +GVLP +V   + L ++  FP   L LP
Sbjct: 375 GLIHPPVGMNVFVIKSVVKDVSFTTIFKGVLPFIVTDIVRLVILIAFPIIALWLP 429