Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  313 bits (802), Expect = 6e-90
 Identities = 168/423 (39%), Positives = 254/423 (60%), Gaps = 3/423 (0%)

Query: 2   VGSIFGWLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFV 61
           VGS+   L  +  G+P+ FSL+   +A +   +       AQ ++GG D+F LLAVPFF+
Sbjct: 7   VGSL---LVAMAMGIPIAFSLLACGVALMWHLDLFDAQILAQNVIGGADSFPLLAVPFFM 63

Query: 62  LTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEI 121
           L G +MN  G+++RI + A +LVGH+ G LG+V IMA  L S +SGSA+ADA  L  L +
Sbjct: 64  LAGEIMNVGGLSKRIVDLALALVGHVKGGLGYVTIMAGCLLSALSGSAVADAAALTALLL 123

Query: 122 KSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCI 181
             M  A +    AGGL AA+ IIGP++PPS+ LVI+GV +N SI  LF+A  +PGLL   
Sbjct: 124 PMMVKAGHDKARAGGLIAATGIIGPVIPPSIGLVIFGVAANVSISKLFMAAIVPGLLIGG 183

Query: 182 ALMVMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAV 241
           AL V   ++ +       P+   RE  K+ ++A  +LL PVII+ G+  G FTPTEAA V
Sbjct: 184 ALWVTWAWLVRHEKIQPPPRKPAREVMKAARDAGWALLLPVIILVGLRMGVFTPTEAAVV 243

Query: 242 SSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLAD 301
           +++YA F+ T +Y  L+     ++      T+AVV  ++    V  W++    LP  +  
Sbjct: 244 AAVYAFFVATFIYRELSFDALYKVFVSAAKTSAVVMFLIAAAMVSAWLITVADLPSKVVG 303

Query: 302 YFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAIL 361
                  N ++L++++ LL++ +GT ++    +L+L P L+PV  A GIDPV+FGVM I+
Sbjct: 304 LLEPFMGNKILLMIMVMLLVMAVGTAMDMTPTILILTPVLMPVVIAAGIDPVYFGVMFII 363

Query: 362 NLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPEL 421
           N  IG++TPP+G+ L VV+ VG +    +TRGVLP +   F ++ ++ +FPQ   +    
Sbjct: 364 NNSIGLITPPVGVVLNVVAGVGKMKMDDVTRGVLPFMAAEFAIMFVMVIFPQLVTVPARW 423

Query: 422 FLG 424
           F G
Sbjct: 424 FGG 426