Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  224 bits (570), Expect = 8e-63
 Identities = 118/418 (28%), Positives = 223/418 (53%), Gaps = 9/418 (2%)

Query: 7   GWLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHL 66
           G+ G +  GMP+ F L   +L F +   S  +   +QQ++ G D++ LLA+PFFVL G L
Sbjct: 214 GFFGGMALGMPIAFVLALSSLVFFMADPSLPMLVYSQQVMAGTDHYVLLAIPFFVLAGLL 273

Query: 67  MNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRD 126
           M + G++ R+      + G + G LG + I A+  FSG+SGS LAD   +G + + ++R 
Sbjct: 274 MEANGMSSRLIELLLRMFGRLRGGLGLITITATAFFSGVSGSKLADIAAVGGIIMPAVRK 333

Query: 127 AKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVM 186
            K   +   GL A + ++   +PP + ++I G V+N SI  LF+AG +P ++  ++L  +
Sbjct: 334 TKQDPNETAGLLACTAVMAETIPPCINMIIMGFVANISIAGLFMAGLVPAVVLAVSLAAV 393

Query: 187 SYFICKKRGYMTLPKAS---RREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSS 243
           + ++    G    P  +   R   F+ L  A ++L+   +I  G+ SG  T TE ++ + 
Sbjct: 394 TIYV----GTKINPDEAFDVRTPMFRLLGGALVALVMVAMIGKGVTSGVATSTEVSSFAV 449

Query: 244 LYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYF 303
           +YAL +G + +  LT++    +   + +    +  +V   +   + +  +Q+PQ L+++ 
Sbjct: 450 IYALVVGWLAFRELTVKSVARLFVRSASMAGGILFIVAAASSLSFALTIQQIPQYLSEFM 509

Query: 304 LTI--SDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAIL 361
           +    S    + ++L  L+++  G  +E    L++  P L P+AS +G++P+HFG + ++
Sbjct: 510 IGFAHSYGSTMFVMLSVLIMIVFGAILEGAPALIIFGPLLTPIASQLGVNPLHFGTVMVI 569

Query: 362 NLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLP 419
            +  G+  PP+G+ L+    +       + R +L  L  LF+ L ++ + P F+  LP
Sbjct: 570 AMGFGLFAPPVGLGLFATCAITGTQVKDVARPMLKYLAVLFVTLVVLVLVPAFSTWLP 627