Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score =  281 bits (720), Expect = 2e-80
 Identities = 153/419 (36%), Positives = 239/419 (57%), Gaps = 11/419 (2%)

Query: 11  LLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQML----GGIDNFTLLAVPFFVLTGHL 66
           L+  GMPV +     AL    L  +  I+   Q M+     G++ F+LLA+PFFVL G +
Sbjct: 13  LILIGMPVAY-----ALGLSALIGAWWIDIPLQAMMIQVASGVNKFSLLAIPFFVLAGAI 67

Query: 67  MNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRD 126
           M   G++ R+  FA  LVG + G L  VNIMAS  F  +SGS++AD   +G + I  M  
Sbjct: 68  MAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSVLIPEMER 127

Query: 127 AKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSN--TSIGALFLAGAIPGLLCCIALM 184
             Y  +F+  +T +  +   L PPS   V+Y + +    SI +LF+AG +PGLL    +M
Sbjct: 128 KGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIMPGLLLSAVMM 187

Query: 185 VMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSL 244
            +     KKR Y        RE  K   EA   L+  VII+GGI SG FT TE+AAV+ +
Sbjct: 188 GLCLIFAKKRNYPKGEVIPLREALKIAGEALWGLMAMVIILGGILSGVFTATESAAVAVV 247

Query: 245 YALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFL 304
           ++ F+   +Y     +   +++  TV T ++V +++     FG+++   Q+P  +   FL
Sbjct: 248 WSFFVTMFIYRDYKWRDLPKLMHRTVRTISIVMILIGFAASFGYVMTLMQIPSKITTAFL 307

Query: 305 TISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLM 364
           T+SDN  V+L+ IN +L+ LGT ++   L+L+L P L+PV + +G+DPVHFG++ ++NL 
Sbjct: 308 TLSDNRYVILMCINFMLMLLGTVMDMAPLILILTPILLPVITGIGVDPVHFGMIMLVNLG 367

Query: 365 IGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPELFL 423
           IG++TPP+G  L+V S +G +   +  + ++P  + LF+VL  V   P  +L LP + L
Sbjct: 368 IGLITPPVGAVLFVGSAIGKVSIESTVKALMPFYLALFLVLMAVTYIPAISLWLPSVVL 426