Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  277 bits (708), Expect = 5e-79
 Identities = 152/420 (36%), Positives = 242/420 (57%), Gaps = 6/420 (1%)

Query: 8   WLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFFVLTGHLM 67
           +L LL  G+PV FS+   ++A  +L     +    Q+M+GG+  F+ +A+PFFV  G LM
Sbjct: 10  FLVLLLIGVPVAFSIGLASVA-TVLYAGVPVPIVFQKMVGGMQVFSFMAIPFFVFAGELM 68

Query: 68  NSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDA 127
              GI +RI  FA SLVGH+ G LG  N++   LF G++GSALAD   +G + I  M+  
Sbjct: 69  LYGGIADRIVRFANSLVGHVRGGLGMSNVVGCTLFGGVAGSALADVSAMGSVMIPLMKKE 128

Query: 128 KYHDDFAGGLTAASCIIGPLVPPSVPLVIYGV----VSNTSIGALFLAGAIPGLLCCIAL 183
            Y  D+A  +T  + ++G L+P S  L+I+ +    +++ S+  L LA  +P +L  +  
Sbjct: 129 GYDADYAVNVTTHAALVGVLMPTSHNLIIFTLATTGIASVSVLNLILAAIVPAVLLTVCN 188

Query: 184 MVMSYFICKKRGYMTLPK-ASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVS 242
           +  +Y++  KRGY T  K     E   +   A   LL  VII+ GI SG FT  E+AA +
Sbjct: 189 LAAAYYVAVKRGYPTRGKFPGWGEVLSAWLGALPGLLIVVIILVGILSGVFTAAESAATA 248

Query: 243 SLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADY 302
            L+AL +  +VY +L+ + F++   +   TT VV L++   + FG+ +A  ++PQ   + 
Sbjct: 249 VLWALVVTVLVYRSLSWKDFLKACAKASKTTGVVLLLIGISSAFGYFMALYEVPQKTGEL 308

Query: 303 FLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILN 362
             ++SDNP V+ L+IN+LL  LGTF++  A +L+  P  +P+A   G+DP  FG++ ++N
Sbjct: 309 MTSVSDNPWVIFLMINILLFILGTFLDMAATILVCTPIFLPIAMHFGMDPAQFGIVMLIN 368

Query: 363 LMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPELF 422
             +G+ TPP+G+  +V   +G I    + R +LP    L + L LV   P F+L LP +F
Sbjct: 369 CALGLNTPPVGVTQFVGCAIGGISVGQVMRSILPFYGALTVCLMLVTYVPAFSLWLPSVF 428