Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  224 bits (570), Expect = 5e-63
 Identities = 140/428 (32%), Positives = 233/428 (54%), Gaps = 13/428 (3%)

Query: 2   VGSIFGWLGLLFAGMPVGFSLIFVALAFLILTN--STGINFAAQQMLGGIDNFTLLAVPF 59
           +G +  +  +LF  +P+  +L F      +L N  +  ++  A         ++L+ +P 
Sbjct: 6   LGFLVAFAFILFQ-VPIATALAFAGFGGYVLLNGLTPALSMVATVTKDSTLVYSLIVLPL 64

Query: 60  FVLTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQL 119
           FVL G+L+  AGI+  +F  A++ +G   G L    ++A   F  + GS++A A  +G++
Sbjct: 65  FVLMGNLVAGAGISGDLFRAAQAFIGKRRGGLAMATVVACGGFGAICGSSVATAATMGKV 124

Query: 120 EIKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLC 179
            I SMR   Y D  +    AA   +G L+PPSV +V+YGV + T IG LF AG +PGL+ 
Sbjct: 125 AIPSMRKLGYGDSLSSAAVAAGGTLGILIPPSVIMVVYGVATQTHIGMLFAAGIVPGLIA 184

Query: 180 CIALMVMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPV-----IIIGGIFSGKFT 234
               M    +   ++  +  P A   EQ   L  A L  L PV     +++GGI+ G FT
Sbjct: 185 IGGYMAAVKWSVWRKPELA-PLAEDNEQVNKL--ALLRALWPVALIFGVVMGGIYGGFFT 241

Query: 235 PTEAAAVSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQ 294
             EA+ + +  AL    + +++L L+    IL +T  T+A++  +V+G  +FG  V    
Sbjct: 242 SVEASGIGAAAALVF-ALTHHSLKLKDIYAILVDTARTSAMMFAIVLGAALFGEFVNLTG 300

Query: 295 LPQMLADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVH 354
           + + L          P  ++LL+ +L + LGT +ESL+++LL VP   P+  A+G DPV 
Sbjct: 301 VHEGLLQVVKASGLPPFGIILLMIVLYILLGTVLESLSMILLTVPIFFPIILALGYDPVW 360

Query: 355 FGVMAILNLMIGILTPPMGMALYVV-SRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQ 413
           FG++ ++ + IG++TPP+G+ L+V+ S + DIP  T+ RGV+P +V   + + L+A  P 
Sbjct: 361 FGILVVMVVEIGLITPPIGVNLFVIRSVMPDIPMMTVVRGVIPFIVADVLRILLIAAVPA 420

Query: 414 FTLLLPEL 421
            +L LP L
Sbjct: 421 LSLWLPNL 428