Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  319 bits (818), Expect = 9e-92
 Identities = 170/427 (39%), Positives = 260/427 (60%), Gaps = 5/427 (1%)

Query: 1   MVGSIFGWLGLLFAGMPVGFSLIFVALAFLILTNSTGINFAAQQMLGGIDNFTLLAVPFF 60
           ++G +F  L L+  G P+ F+++   L  + L          Q +  G+D+F L+A+PFF
Sbjct: 4   VLGLVF--LALMVIGAPIAFAMLIAGLVAVWLKPGLSSLVVMQNLFSGLDSFPLMAIPFF 61

Query: 61  VLTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLE 120
           +L   LM    +T+ +  FA  LVG   G LGH NI+    FSG+SGSALADA G G + 
Sbjct: 62  ILAAELMTGGALTDVLLKFAARLVGMRRGGLGHANILTLTFFSGISGSALADAAGPGAML 121

Query: 121 IKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNT-SIGALFLAGAIPGLLC 179
           IK MR A Y D +A  LTA++ I+GP++PPS+ +++Y +  N+ SI  LFLAG +PG L 
Sbjct: 122 IKMMRKAGYKDSYAAALTASTAIVGPIIPPSIIMIVYAMTDNSVSITGLFLAGVVPGFLI 181

Query: 180 CIALMVMSYFICKKRGYMTLPKA-SRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEA 238
            ++LMV+++ +  +RGY + P+        +    A  +L+ PVII+GGI  G FTPTEA
Sbjct: 182 ALSLMVVNHIVSVRRGYRSSPELLDPAPLLRLFWRALPALMLPVIILGGIHLGIFTPTEA 241

Query: 239 AAVSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQM 298
           +A + LYAL +G  VY TL +     IL  +   TA +  +V    VF W++   Q+PQ 
Sbjct: 242 SAAAVLYALLVGRFVYGTLRMDMLPAILFRSALMTASILFIVATSAVFAWVLTVGQIPQT 301

Query: 299 LADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVM 358
           +A +   ++ +P+ LL+ IN+LLL +G FIE L  ++++VP L P+A A G++ +HF ++
Sbjct: 302 MAAWIAGMALSPIELLIAINVLLLLVGIFIEPLPGVMIMVPILGPLAEAAGLNSLHFAIV 361

Query: 359 AILNLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLL 418
            I+NL +G++TPP+G  L+V S V  +    + R ++P+LV LF VL L+   P F+  L
Sbjct: 362 VIVNLTLGMVTPPVGGLLFVTSAVSGVRMGPMVREMVPMLVALFTVLMLLTFVPAFSTWL 421

Query: 419 PELFLGY 425
           P + LGY
Sbjct: 422 PGV-LGY 427