Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., TRAP transporter large permease from Magnetospirillum magneticum AMB-1

 Score =  197 bits (502), Expect = 4e-55
 Identities = 126/429 (29%), Positives = 217/429 (50%), Gaps = 29/429 (6%)

Query: 11  LLFAGMPVGFSLIFVALAFLILTNSTGIN---FAAQQML-GGIDNFTLLAVPFFVLTGHL 66
           +L   + +G ++   A    ++ N   +N   F    ++   + N+ L  +P F+L G  
Sbjct: 17  MLVVRIHIGIAMFLAATGIYLVLNHGELNSLLFTLNNLVYARLSNYDLAVIPLFILMGQF 76

Query: 67  MNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRD 126
               G+++ +F+ A +L+GH  G L +    A   F  + GS+LA A  +GQ+ +  +  
Sbjct: 77  ATHGGLSKALFHAAGTLIGHFKGGLAYAATAACAAFGAICGSSLATAATMGQVALPELTR 136

Query: 127 AKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIGALFLAGAIPGLLCCIALMVM 186
             Y    A G  AA   +G L+PPSVPLV+Y V++  SIG LF+A  IPG++  +  M +
Sbjct: 137 RNYSGRLATGTLAAGGTLGILIPPSVPLVVYAVLTQESIGKLFVAAVIPGIIAALGYMAV 196

Query: 187 SYFICKKRGYMTLPKASRREQFKSLKEAFLS-------LLTPVIIIGGIFSGKFTPTEAA 239
              I         PKA    +  SLKE   +       LL  +++I GI+ G   PTEAA
Sbjct: 197 IRIIVSLD-----PKAGPASERVSLKEMIKAQLGIIPVLLVFLVVIVGIYGGWANPTEAA 251

Query: 240 AVSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQML 299
           ++ +  A  +  VV   +  +   + +  T   TA++ ++++G  +    +A  Q+P  L
Sbjct: 252 SIGAA-ACGIIAVVSGGMRFKDLKQSVFGTAIATAMIFMVLIGADLLNSALALTQMPAEL 310

Query: 300 ADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGID-------- 351
           A++       P+ +L  I  + + LG  ++SLA++LL +P   PV   +G+D        
Sbjct: 311 ANWVKNSGMPPVAVLFTIIAIYVLLGCVMDSLAMILLTIPIFYPV--VLGLDFYGMSVDD 368

Query: 352 -PVHFGVMAILNLMIGILTPPMGMALYVVSRVG-DIPFHTLTRGVLPLLVPLFIVLALVA 409
             + FG++A++ + IG++ PP+GM LYV++++  D+P      GVLP L   FI + ++ 
Sbjct: 369 KSIWFGIVALMVVEIGLVHPPVGMNLYVINKIAKDVPLKETAMGVLPFLASDFIRIVVLV 428

Query: 410 VFPQFTLLL 418
            FP   L L
Sbjct: 429 FFPPMALWL 437