Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  279 bits (714), Expect = 1e-79
 Identities = 152/414 (36%), Positives = 235/414 (56%), Gaps = 3/414 (0%)

Query: 11  LLFAGMPVGFSLIFVALAFLILTNSTGINF--AAQQMLGGIDNFTLLAVPFFVLTGHLMN 68
           LL  G P+G  ++  + + ++L     I+    AQ+M   +D+F LLAVPFFVL+G +MN
Sbjct: 18  LLAMGAPIGICIVIASFSTMMLVLPFDISMFATAQKMFSSLDSFALLAVPFFVLSGVIMN 77

Query: 69  SAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQLEIKSMRDAK 128
           S GI  R+ NFAK   G + GSL + NI+ +++F  +SGSA+A +  +G + +       
Sbjct: 78  SGGIAARLVNFAKLFTGKLPGSLSYTNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREG 137

Query: 129 YHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSN-TSIGALFLAGAIPGLLCCIALMVMS 187
           Y   FA  +  AS   G L+PP+   ++Y + S  TSI ALF  G + G+L  +  M+++
Sbjct: 138 YDRGFAAAVNIASAPTGMLIPPTTAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVT 197

Query: 188 YFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTEAAAVSSLYAL 247
             + K+R Y       +    K   EA  SLL  VII+GGI  G FT  EA+A++ +Y L
Sbjct: 198 LVVAKRRNYRVFFTVQKGMALKVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTL 257

Query: 248 FLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQMLADYFLTIS 307
            L  V Y TL ++    IL +TV  T V+  ++   +   + ++   +P  L+D  L IS
Sbjct: 258 LLTMVFYRTLKIKDLPSILLQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGIS 317

Query: 308 DNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGI 367
            N LV+LL+I + LL +G F++    +L+  P L+P+ + +G+DPVHFG++ I NL IG 
Sbjct: 318 ANKLVILLVITVFLLIIGAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAIGT 377

Query: 368 LTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLLLPEL 421
           +TPP+G  LYV + VG +    + + +LP    +  VL L+   P+ TL LP L
Sbjct: 378 ITPPVGSGLYVGASVGKVKVEEVIKPLLPFYGAIIGVLLLITYIPEITLFLPRL 431