Pairwise Alignments

Query, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., TRAP transporter large permease from Escherichia coli ECRC62

 Score =  315 bits (806), Expect = 2e-90
 Identities = 164/428 (38%), Positives = 268/428 (62%), Gaps = 7/428 (1%)

Query: 1   MVGSIFGWLGLLFAGMPVGFSLIFVALAFLI--LTNSTGINFAAQQMLGGIDNFTLLAVP 58
           + G+ F  L L   G+P+ +++    LA +   L  ++ ++  +Q++   +D+FTLLA+P
Sbjct: 10  LFGAFFFMLAL---GVPIVYAIGLSTLASISTQLDFNSALSVVSQKLASRLDSFTLLAIP 66

Query: 59  FFVLTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQ 118
           FF+L+G++MN  GI  R+ NFA+ L G + GSL H NI+A++LF  +SGSA+A A  +G 
Sbjct: 67  FFILSGNIMNHGGIARRLINFARILGGRLPGSLAHCNILANMLFGAISGSAVASAAAMGG 126

Query: 119 LEIKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSN-TSIGALFLAGAIPGL 177
           +         Y   F+  +  AS   G L+PPS  L++Y +VS  TSI ALFLAG +PG+
Sbjct: 127 VMHPQQVKEGYDPAFSTAVNVASAPTGLLIPPSNTLIVYSLVSGGTSIAALFLAGYVPGI 186

Query: 178 LCCIALMVMSYFICKKRGYMTLPKASRREQFKSLKEAFLSLLTPVIIIGGIFSGKFTPTE 237
           L  +ALMV++  I  +RGY    + + R+   ++  A  S+   V+I+GG+ SG FTPTE
Sbjct: 187 LLGLALMVIAGIIAVRRGYPKPERPTLRQAGVAIWMAIPSIFLIVLIMGGVLSGIFTPTE 246

Query: 238 AAAVSSLYALFLGTVVYNTLTLQGFIEILKETVNTTAVVALMVMGVTVFGWIVAREQLPQ 297
           A+A++ +Y LFL  V+Y  ++++   +I  E+V TTA+V L++       W ++   +P 
Sbjct: 247 ASAIAVIYTLFLALVLYREISVKDLPKIFLESVITTAIVLLLIGSSMGMSWAMSNADVPF 306

Query: 298 MLADYFLTISDNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVASAVGIDPVHFGV 357
           ++ D   TISDNP+++LL+IN++LL +GTF++    +L+  P  +PV + +G+DP+HFG+
Sbjct: 307 LILDLLNTISDNPIIILLIINIILLIIGTFMDMTPAVLIFTPIFLPVVTELGMDPIHFGI 366

Query: 358 MAILNLMIGILTPPMGMALYVVSRVGDIPFHTLTRGVLPLLVPLFIVLALVAVFPQFTLL 417
           + +LN+ IGI TPP+G  L+V   V  +P + + + +LP    + +VLA+V   PQ ++ 
Sbjct: 367 VMVLNMCIGICTPPVGSVLFVGCSVSKLPINKIIKPMLPFYAVMVLVLAMVTYIPQISMA 426

Query: 418 LPELFLGY 425
           LP   LGY
Sbjct: 427 LPRA-LGY 433