Pairwise Alignments

Query, 462 a.a., restriction endonuclease subunit S from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 46.6 bits (109), Expect = 1e-09
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 13/168 (7%)

Query: 288 EELLSVSHMTGVTPRSEKNVTMFMAEDYTGSKLCHSGDLVINIMWAWMGALGVSDRTG-- 345
           E L+ V    G+ P  E+             K+   G    N M   +G++  SD     
Sbjct: 23  ERLVGVFKDQGMQPMRER----VRGASIERCKIVEPGAFAYNPMRINIGSIARSDSAERL 78

Query: 346 IVSPSYGVFREQREGTFVPKYLEMLLKSTKYVEYYNKVSTGLHSSRLRFYGHMLFDMALG 405
           +VSP Y VF E  E      +L++L KS  +  +      G    R+R Y   L +    
Sbjct: 79  LVSPDYVVF-EPDEAKVDGDFLDLLRKSEAWGAFVGHAGDG--GVRIRIYFDHLAEFRFA 135

Query: 406 FPPYEEQTQIVEYISRECSKVDEAITVQAEQVSKLKEYKTTLINSAVT 453
            PP  EQ +I E +    S VDEAI      + + ++ K  ++   +T
Sbjct: 136 LPPLPEQRRIAEIL----SSVDEAIAATRAVIEQTRKVKQAVLERLLT 179



 Score = 38.1 bits (87), Expect = 5e-07
 Identities = 55/272 (20%), Positives = 116/272 (42%), Gaps = 39/272 (14%)

Query: 193 KFCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVTQGLNPDATM 252
           +F +P   EQ  IA+ L +    ++EAIA  +  IE  ++ KQ ++++ +T+G+      
Sbjct: 133 RFALPPLPEQRRIAEILSS----VDEAIAATRAVIEQTRKVKQAVLERLLTKGI------ 182

Query: 253 KYSGVDWIGAIPGHWIVKRAKYLLDEINERSETG-LEELLSVSHMTGVTPRSEKNVTMFM 311
                       GH   K+ +  + EI E  +TG + E  ++     +T +   +   + 
Sbjct: 183 ------------GHTRFKQTE--IGEIPEGWKTGTVGEFFTLQRGFDITEK-HASEGKYP 227

Query: 312 AEDYTGSKLCHSGDLVIN--IMWAWMGALG-VSDRTGIVSPSYGVFREQREGTFVPKYLE 368
               +G    HS  +++   ++    G LG V    G   P       +      PK++ 
Sbjct: 228 VVSSSGISYYHSTSMILGPAVITGRKGKLGQVHFIDGPCWPHDTTLWVKDFKGREPKFIY 287

Query: 369 MLLKSTKYVEYYNKVSTGLHSSRLRFYGHMLFDMALGFPPYEEQTQIVEYISRECSKVDE 428
             L+S   +E ++  +     +R     +++  +   FPP  EQ  I  ++      ++E
Sbjct: 288 WFLRSLN-LEKFDAATAVPTLNR-----NVVHALKCAFPPNSEQLLIAHHL----DSIEE 337

Query: 429 AITVQAEQVSKLKEYKTTLINSAVTGKIKVTE 460
               Q   ++  +  K+ L++  +TG+ +V++
Sbjct: 338 TERSQTRNLASYEHMKSALMSDLLTGRKRVSD 369