Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 998 a.a., HsdR family type I site-specific deoxyribonuclease from Rhodanobacter sp000427505 FW510-R12

 Score = 81.3 bits (199), Expect = 3e-19
 Identities = 154/649 (23%), Positives = 262/649 (40%), Gaps = 119/649 (18%)

Query: 138 ANLFSVTRQVCYSNANPL-EEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRD 196
           +N+F VT +  Y N        D+V  ING+P+  +E KNP                 +D
Sbjct: 126 SNIFQVTWEWAYRNGTRKGNRADVVFVINGMPVAIVENKNP---------------KSKD 170

Query: 197 ANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKG----------FNFGKGNPI 246
           A    L   R      ++T E+ +T+      T  + +  G          FN+ +  P+
Sbjct: 171 AMSKALVQLR---RYELETPEM-LTSPQVFNITHLIEYFYGVTWNTQRKFVFNWKEEQPM 226

Query: 247 NP----HGHKTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFP---------- 292
                  G   A   QE  R  +  + ++HF        + L    LFF           
Sbjct: 227 GRMPKCRGRMDA---QE--RPGNYEDRVKHFFE-HARFLRMLRDWILFFEQDDELRKTIL 280

Query: 293 RYHQMDVVRRLVDHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRG 352
           R HQ     ++ + C+ +   ++ L+ H+ GSGK+ ++  AA  ++E         G+  
Sbjct: 281 RQHQTRAAIKVAERCA-DPAKRSGLVWHTQGSGKTFTMVTAARLMLEN---PQRFAGA-- 334

Query: 353 KEMPLFDSVIVVTDRRLLDKQLRDNIK----EFSEVKNIVAPAFKSSELKSALENG-KKI 407
                  +V++V DR  L+ QL   +     +       V  A     LKS L+     +
Sbjct: 335 -------TVLLVVDRNELEGQLSGWVDALLGDLQGSGIAVELATSKKRLKSLLKQEFSGL 387

Query: 408 IITTIQKFPYIVDGIADLSDR-RFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQ 466
           I+T I KF  +    A+LS R    V+IDEAH S  G   D  N  MG +    L     
Sbjct: 388 IVTMIHKFDKLD---ANLSTRSNVYVLIDEAHRSTGG---DLGNYLMGALPHATLIGFTG 441

Query: 467 SAKNRKMRSNASYFAFTATPKNTTLEKFG--QRQADGTYVPFHLYSMKQAIEEGFILDVI 524
           +  ++      ++  F     +  L+K+   +  ADGT V      ++  +    +L  +
Sbjct: 442 TPVDKTAYGKGTFKTFGREDTSGYLDKYSIAESVADGTTV-----RLRHTLAPARVLLPV 496

Query: 525 ANYTTYKSYYEIEKSIQDNPEFDSKKAQKR---LRAYVEASQETIDTKAEIMLEHFIKHV 581
                 + +Y + +S   +   D  +   R   LRA++++ Q  +D  A  + +HF ++V
Sbjct: 497 EKLE--QEFYALAESEGISDINDLNRILDRAVNLRAFLKSDQR-VDEVARFVAQHFRENV 553

Query: 582 VNGKKLKGKG-KGMVVTQNIESAIRYYRALTRQLNKMGNPFKVAIAFSGSKEVDGIEY-- 638
                 +  G K  +V  + E+   Y +AL + L     P   ++    S   D I+Y  
Sbjct: 554 ------EPLGYKAFLVGVDREACALYKQALDKYL-----PADYSVPVYTSSAADAIDYPL 602

Query: 639 -TEADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCA 697
                I+   E   +  F     RK    P          ++L+V +K LTG+D P L A
Sbjct: 603 VASHQIDAACEKRVRKLF-----RKPGQQP----------KILIVTDKLLTGYDAPILYA 647

Query: 698 MYVDKKLASVLCVQALSRLNRS-APKYGKKTEDLFVLDFFNSVDDIKTA 745
           MY+DK +   + +QA+SR+NR      G++     ++DF   + D+  A
Sbjct: 648 MYLDKPMRDHVLLQAISRVNRPYEDAEGRQKPGGLIVDFIGMLRDLNKA 696