Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

 Score = 51.2 bits (121), Expect = 3e-10
 Identities = 68/280 (24%), Positives = 115/280 (41%), Gaps = 74/280 (26%)

Query: 254 AYLWQEVFRKESIANIIQHFIRL----DGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSV 309
           A LW    + + + N +QH I      DGS +          PRY+QM+ + R V+    
Sbjct: 133 AELWHRYCQWKGLDNAVQHKIEAPYYDDGSGR---------MPRYYQMNAINRTVE-AVA 182

Query: 310 NGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRL 369
            G  +  L+  + G+GK    T+ A+Q+I        L  S+ K+  LF     + DR +
Sbjct: 183 RGQDRVLLVM-ATGTGK----TYTAFQIIWR------LWKSKQKKRILF-----LADRNI 226

Query: 370 LDKQLRDN-IKEFSEVKNIVAPAFKSSELKSALENGKKIIITTIQKFPYIVD--GIADLS 426
           L  Q ++N  K F +    +A        +  ++   +I ++  Q      +   +    
Sbjct: 227 LVDQTKNNDFKPFGQAMTKIA--------RRQIDTSYEIYLSLYQAVTGAEEEMNVYKQF 278

Query: 427 DRRF--AVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTA 484
            R F   ++IDE H      +     E +G+                   SNA++   TA
Sbjct: 279 SRDFFDLIVIDECHRGSAAED-SAWREILGYF------------------SNATHVGLTA 319

Query: 485 TPKNT----TLEKFGQRQADGTYVPFHLYSMKQAIEEGFI 520
           TPK T    ++  FG+        P + Y++KQ IE+GF+
Sbjct: 320 TPKETKEVSSITYFGE--------PVYSYTLKQGIEDGFL 351