Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1007 a.a., type I restriction-modification system endonuclease from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 95.9 bits (237), Expect = 1e-23
 Identities = 147/632 (23%), Positives = 257/632 (40%), Gaps = 110/632 (17%)

Query: 159 DMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRDANQPLLNFARCLVHMAVDTDEV 218
           D+++F+NG+PL+  E KN +     V     Q +        L  +      + V +D  
Sbjct: 137 DLIIFVNGLPLVLFEFKNLFNQDATVEAAYNQVQHYTYQIPQLFEYNA----LTVVSDG- 191

Query: 219 YMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAYLWQEVFRKESIANIIQHFIRLDG 278
              T L G  +  L +   +    G  +  +G     L + +   E +   ++H+I    
Sbjct: 192 --QTTLHGMYSSGLEWFAAWKSIDGREVTGNGFALETLIKGLLVPERLLQYVRHYI-FHE 248

Query: 279 SSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVN----GVGQTYLIQHSAGSGKSNSITWAA 334
             K QL K+     +YHQ   ++  +     +    G G+  ++ H+  SGKS  IT A 
Sbjct: 249 PDKGQLIKKGA---KYHQFFGIQYALQETLKSVKPYGDGRIGVVWHTTRSGKS--ITMAI 303

Query: 335 YQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAFKS 394
           Y       I   LP  +        +++V  DR  L++QL D+     ++   V  A  +
Sbjct: 304 YT-----GILRQLPELKNP------TIVVQVDRFDLNRQLFDDFVAAKDLVGDVQIANTT 352

Query: 395 SELKSALE-NGKKIIITTIQKFPYIVDGIAD------LSDR-RFAVIIDEAHSSQDGHNQ 446
            EL+S L  +G  ++ +T+QKF               LS R    VI DE H +Q G  Q
Sbjct: 353 DELRSLLSGDGGGVVFSTVQKFNLKDTATGRELEHPVLSTRDNIIVIADECHRTQYGLVQ 412

Query: 447 DKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNT----TLEKFGQRQADGT 502
              N                    R+    AS+  FT TP ++    T+  FG       
Sbjct: 413 GFANNL------------------RRALPQASFIGFTGTPVDSKDADTVAVFGDI----- 449

Query: 503 YVPFHLYSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQDNPEF----DSKKAQKRLRAY 558
               H Y ++QA E+  ++ +       K +   E+  ++  E     +  +  + L A 
Sbjct: 450 ---IHTYDIRQATEDKAVVPIYYEPRLAKLHLGNEQLEEEAEEITGGLEENEKNRILWAA 506

Query: 559 VE---ASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLN 615
           +E    ++E ++  A+ +L+H+       ++    GK M+V  +  + ++ Y ALT    
Sbjct: 507 MEDAAGAKERVEAIAKDILQHY-----TSREKSLSGKAMIVCMSRRNCVKLYDALT---- 557

Query: 616 KMGNPFKVAIAFSGSKEVDGIEYTEADING---FPEGDTKDYFD-VNYKRKEPDSPIPKH 671
                     A  G  EV  I  T    +     P    K+  + V  + K+PD P+   
Sbjct: 558 ----------ALEGCPEVAVIMTTNIAKDPDTWHPHVRGKEQMEAVKARFKDPDDPL--- 604

Query: 672 VDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLF 731
                 +L++V + +LTGFD P +  +YVDK ++    +QA   +NR A  +  K   L 
Sbjct: 605 ------KLVIVRDMWLTGFDNPAMHTLYVDKVMSGHNLIQA---VNRVATVFRDKPSGL- 654

Query: 732 VLDFFNSVDDIKTAFDPFYTSTTLSEATDVNV 763
           ++D+    D ++ A   + T+    + T VN+
Sbjct: 655 IVDYIGIGDKLRDATKKYTTAGGKGKVT-VNI 685