Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1032 a.a., Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  106 bits (265), Expect = 7e-27
 Identities = 189/844 (22%), Positives = 312/844 (36%), Gaps = 154/844 (18%)

Query: 133 KKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQY- 191
           KK+ + N   V +Q   +  +     D+ + +NG+PL+ +ELK         ++   +Y 
Sbjct: 126 KKNVARNKVQVIKQFEQTGKHA-NRYDVTILVNGLPLVQVELKKRGVAIREAFNQVHRYS 184

Query: 192 RDDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGH 251
           ++  +++Q L  F +  V         +  T    KN+F   F   +       I     
Sbjct: 185 KESFNSDQSLFKFLQLFVISNGTDTRYFANTTQRNKNSF--DFTMNWAKADNTLIKDLKD 242

Query: 252 KTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNG 311
            TA      F+K ++ N++ H+   D S+       TL   R +Q+    R++   + + 
Sbjct: 243 FTATF----FQKHTLLNVLLHYSVFDVSN-------TLLVMRPYQIAATERILWKINSSH 291

Query: 312 VGQTY-------LIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVV 364
             + +        I H+ GSGK+ +   AA                   E+   D V  V
Sbjct: 292 HAKKWSNAESGGFIWHTTGSGKTLTSFKAA---------------RLATELDFIDKVFFV 336

Query: 365 TDRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSALE-NGKKIIITTIQKFPYIVDGIA 423
            DR+ LD Q     + FS   + V  +  ++ LK  LE +  KI++TTIQK   ++   A
Sbjct: 337 VDRKDLDYQTMKEYQRFSP--DSVNGSDSTAGLKRNLEKDDNKIVVTTIQKLNNLMKSEA 394

Query: 424 DLS--DRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFA 481
           DL    ++   I DE H SQ G  Q  L                     +K     S F 
Sbjct: 395 DLPVYGKKVVFIFDECHRSQFGEAQKNL---------------------KKKFKKFSQFG 433

Query: 482 FTATP--------KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKSY 533
           FT TP          TT   FG+          H Y +  AI +  +L    +Y   +  
Sbjct: 434 FTGTPIFPENALGAETTASVFGRE--------LHSYVITDAIRDEKVLKFKVDYNDVRPQ 485

Query: 534 YEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKG 593
           ++  ++ +D  +  + + ++ L        + I   ++ +L +F +      +L    KG
Sbjct: 486 FKAIETEKDEKKLSAAENRQAL-----LHSDRIREVSQYILNNFRQKT---HRLHAGNKG 537

Query: 594 ---MVVTQNIESAIRYYRALTRQLNKMGNPFKVAIAFS--GSKEVDGI----------EY 638
              M    ++++A  YY            P KVA  FS   ++E D I            
Sbjct: 538 FNAMFAVSSVDAAKLYYECFRELQKTSDKPLKVATIFSFAANEEQDAIGDIQDESFDVSA 597

Query: 639 TEADINGFPEGDTKDYFDVNYKRKEPDS--------PIPKHVDQDAYRLLVVANKYLTGF 690
             +    F      DY  +       DS         + K V      LL+V   +LTGF
Sbjct: 598 MNSSAKEFLSAAIADYNTLFKTNFSVDSNGFQNYYRDLAKQVKAKEIDLLIVVGMFLTGF 657

Query: 691 DQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFY 750
           D P L  ++VDK L     +QA SR NR                    + D    F    
Sbjct: 658 DAPTLNTLFVDKNLRFHGLMQAYSRTNR--------------------IFDATKTFGNIV 697

Query: 751 TSTTLSEATDVNVLHELKDDMDDTDVYEWFEVEEFNKRFFE---GREAQDLSPIIDIAAA 807
           T   L +AT   +   L  D +  +V       E+ + F +   G   +    ++    A
Sbjct: 698 TFRDLEQATIEAI--TLFGDKNTKNVVLEKSYREYMEGFTDAATGEARRGFKDVVQELEA 755

Query: 808 RFNHELELENEFKVDFKVKAKQFVKIYGQIASIMPYEVVQWEKLFWFLKFLIPKLSVEDP 867
           RF     +E E         K F K++G+   +    ++Q    F  LK L    +V   
Sbjct: 756 RFPDPAAIEKE------SDKKAFAKLFGEYLRV--ENILQNYDEFASLKEL---QTVNLT 804

Query: 868 DKEALDSL-----LDSVDLSSYGLQRVKLNHSIELDD-SETELDPQNPNPRGAYGPEAEK 921
           D  A+++      L   DL++  LQ + L    ++ D   T  D ++   R   G E EK
Sbjct: 805 DAAAVEAFKAKHYLSDEDLTA--LQAITLPAERKIQDYRSTYNDVRDWLRREKAGAEKEK 862

Query: 922 DPLD 925
             +D
Sbjct: 863 STID 866