Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1080 a.a., type I site-specific deoxyribonuclease, HsdR family from Kangiella aquimarina DSM 16071

 Score = 97.8 bits (242), Expect = 4e-24
 Identities = 150/623 (24%), Positives = 261/623 (41%), Gaps = 114/623 (18%)

Query: 159 DMVLFINGIPLITLELKNPWTGQNAVYHGQKQY--RDDRDANQPLLNFARCLVH------ 210
           D +L+ING+PL+  E K+       ++    Q   R  R   Q  L  A C++       
Sbjct: 163 DGILYINGLPLVVFEFKSAIREDATIHDAYVQLATRYRRAIPQLFLYNAFCVISDGANNR 222

Query: 211 ---MAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAY-LWQEVFRKESI 266
              +  D +  Y   K+ G  T                I   G  + + + + +F K+ +
Sbjct: 223 MGTLFSDYEFYYTWRKVTGDET----------------IEHDGISSLHTMIKGLFEKKRL 266

Query: 267 ANIIQHFIRLDGSSKKQLDKRTLF-FPRYHQMDVVRRLVDHC---SVNGVGQTYLIQHSA 322
             +I+HFI      K  L+ + +  +P+Y+    +   + H      +G G TY    + 
Sbjct: 267 LEVIRHFIYFP--DKTHLETKIICRYPQYYAATKLFNNIQHHLRPEGDGKGGTYF--GAT 322

Query: 323 GSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLR---DNIK 379
           G GKS ++ +    L+++   +               +++++TDR  LD QL    +N K
Sbjct: 323 GCGKSFTMQFLTRLLMKSVDFNSP-------------TIVLITDRTDLDDQLSKQFENAK 369

Query: 380 EFSEVKNIVAPAFKSSELKSALENGKK--IIITTIQKFPYIVDGIADLSDRRFAVII-DE 436
           ++   +NI +   ++ EL+  L+  K   + +TTI KF    +    LS+R   + I DE
Sbjct: 370 KYIGDENIKSVESRA-ELREILQGRKSGGVFLTTIHKF---TEDTQLLSERTNIICISDE 425

Query: 437 AHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKN-RKMRSNASYFAFTATPKNTTLEKFG 495
           AH SQ   +Q         V+E  + K    AK       NA+Y  FT TP + TL+ FG
Sbjct: 426 AHRSQTNLDQKVR------VTEHGVKKTYGFAKYLHDSLPNATYVGFTGTPVDATLDVFG 479

Query: 496 QRQADGTYVPFHLYSMKQAIE-----EGFILDVIANYTTYKSYYEIEKSIQDN--PEF-- 546
           +     T       S+K  I      EG    V+ + T  +   +  ++  D+   E+  
Sbjct: 480 EVVDSYTMTE----SVKDEITVKIVYEGRAAKVLLDNTKLQEIEDYYQACSDDGATEYAI 535

Query: 547 -DSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIR 605
            +SKKA   +   +    + +   A+  +EH+ + +  G  +KGK   M V  N + A  
Sbjct: 536 EESKKAAANM-GVILGDPDRLRALAKDFVEHYEERIQEGATIKGKA--MFVCANRQIAYD 592

Query: 606 YYRALTRQLNKMGNPFKVAIAFSGSKEVD-GIEYTEADINGFP------------EGDTK 652
           +Y+ +            +   +S  KE + G E TE +                 + D K
Sbjct: 593 FYKEV----------ITLRPEWSEIKECEEGAELTEKERKKIKPIERIKMVMTRGKDDPK 642

Query: 653 DYFDV---NYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLC 709
           + +D+      RKE D        +  +++ +V + +LTGFD P L  +Y+DK +     
Sbjct: 643 ELWDMLGTKDDRKELDRQFKNA--KSNFKIAIVVDMWLTGFDVPFLDTIYIDKPIQRHNL 700

Query: 710 VQALSRLNRSAPKYGKKTEDLFV 732
           +Q +SR+NR   K+  K + L V
Sbjct: 701 IQTISRVNR---KFEGKEKGLVV 720