Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1038 a.a., Type I restriction enzyme EcoR124II endonuclease subunit from Escherichia coli ECRC62

 Score = 92.4 bits (228), Expect = 1e-22
 Identities = 141/645 (21%), Positives = 244/645 (37%), Gaps = 138/645 (21%)

Query: 133 KKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQY- 191
           KK+   N   + +Q   + ++     D+ + +NG+PL+ +ELK         ++   +Y 
Sbjct: 126 KKNLMRNKVQIIQQFEQAGSHA-NRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYS 184

Query: 192 RDDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGH 251
           ++  ++   L  + +  V         +  T    KN+F   F   +       I     
Sbjct: 185 KESFNSENSLFKYLQLFVISNGTDTRYFANTTKRDKNSF--DFTMNWAKSDNTLIKDLKD 242

Query: 252 KTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNG 311
            TA      F+K ++ N++ ++   D S       +TL   R +Q+    R++   + + 
Sbjct: 243 FTATF----FQKHTLLNVLVNYSVFDIS-------QTLLVMRPYQIAATERILWKINSSY 291

Query: 312 VGQTY-------LIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVV 364
             + +        I H+ GSGK+ +   AA                   E+   D V  V
Sbjct: 292 KAKNWSTPESGGFIWHTTGSGKTLTSFKAA---------------RLATELDFIDKVFFV 336

Query: 365 TDRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSALE-NGKKIIITTIQKFPYIVDGIA 423
            DR+ LD Q     + FS   + V  +  ++ LK  L+ +  KII+TTIQK   ++   +
Sbjct: 337 VDRKDLDYQTMKEYQRFSP--DSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES 394

Query: 424 DLS--DRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASY-F 480
           DL   +++   I DE H SQ G  Q                      KN K +    Y F
Sbjct: 395 DLPVYNQQVVFIFDECHRSQFGEAQ----------------------KNLKKKFKRYYQF 432

Query: 481 AFTATP--------KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKS 532
            FT TP          TT   FG+          H Y +  AI +  +L    +Y   + 
Sbjct: 433 GFTGTPIFPENALGSETTDSVFGRE--------LHSYVITDAIRDEKVLKFKVDYNDVRP 484

Query: 533 YYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLK---- 588
            +   KS++   +     A +  +A++   +          ++   ++++N  + K    
Sbjct: 485 QF---KSLETETDEKKLSAAENQQAFLHPMR----------IQEITQYILNNFRQKTHRT 531

Query: 589 ---GKG-KGMVVTQNIESAIRYYRALTRQLNKMGN------PFKVAIAFS--GSKEVDGI 636
               KG   M+   ++++A  YY    R   +  N      P +VA  FS   ++E + I
Sbjct: 532 FPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRVATIFSFAANEEQNAI 591

Query: 637 ------------------EYTEADINGFPEGDTKDYFDVNYKRKEPD-----SPIPKHVD 673
                             E+ +A I  +       YF  N+             + + V 
Sbjct: 592 GEISDETFDTSAMDSSAKEFLDAAIREY-----NSYFKTNFSTDSNGFQNYYRDLAQRVK 646

Query: 674 QDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNR 718
                LL+V   +LTGFD P L  ++VDK L     +QA SR NR
Sbjct: 647 NQDIDLLIVVGMFLTGFDAPTLNTLFVDKNLRFHGLMQAFSRTNR 691