Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 810 a.a., DEAD/DEAH box helicase from Escherichia coli ECRC101

 Score = 46.2 bits (108), Expect = 9e-09
 Identities = 88/382 (23%), Positives = 152/382 (39%), Gaps = 100/382 (26%)

Query: 254 AYLWQEV-----FRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCS 308
           A LWQ+      + +  +  I Q +   DGS K          PRY+Q+  + + ++  S
Sbjct: 137 AELWQKFCLWKGYTQAQLPVITQDYYD-DGSGKS---------PRYYQLQAINKTIEAVS 186

Query: 309 VNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRR 368
            NG  +  L+  + G+GK    T+ A+Q+I        L  S+ K+  LF     + DR 
Sbjct: 187 -NGQNRVLLVM-ATGTGK----TYTAFQIIWR------LWKSKNKKRILF-----LADRN 229

Query: 369 LLDKQLRDN-IKEFSEVKNIVA-----PAFKSSELKSALENGKKIIITTIQKFPYIVDGI 422
           +L  Q ++N  + F      V+     PA+   E+  AL           + F  +    
Sbjct: 230 ILVDQTKNNDFQPFGTAMTKVSGRTIDPAY---EIHLALYQAITGPEEDQKAFKQVAPDF 286

Query: 423 ADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAF 482
            DL      ++IDE H               G  SED   + +         S+A+    
Sbjct: 287 FDL------IVIDECHR--------------GSASEDSAWREILD-----YFSSATQIGL 321

Query: 483 TATPKNT----TLEKFGQRQADGTYVPFHLYSMKQAIEEGFI---------LDV-IANYT 528
           TATPK T    + + FG         P ++YS+K+ IE+GF+         +DV +  + 
Sbjct: 322 TATPKETHEVSSTDYFGD--------PVYVYSLKEGIEDGFLAPYKVVRVDIDVDLQGWR 373

Query: 529 TYKSYYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLK 588
             K   ++   + D+  ++ K   + +          ID + E++      ++   K+  
Sbjct: 374 PTKGQTDLNGEVIDDRIYNQKDFDRTM---------VIDERTELVARTITDYL---KRTN 421

Query: 589 GKGKGMVVTQNIESAIRYYRAL 610
              K +V   +I+ A R  RAL
Sbjct: 422 PMDKTIVFCNDIDHAERMRRAL 443