Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1031 a.a., HsdR family type I site-specific deoxyribonuclease from Dickeya dianthicola ME23

 Score = 99.4 bits (246), Expect = 1e-24
 Identities = 194/906 (21%), Positives = 346/906 (38%), Gaps = 180/906 (19%)

Query: 159 DMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDRDANQPLLNFARCLVHMAVDTDEV 218
           D+VL++NGI L  +ELK        V  G +Q  D++        F    + MA +  + 
Sbjct: 136 DLVLYVNGIALGVIELKR---SSVHVSEGIRQNLDNQKKTFIRNFFTTMQLVMAGNDTQG 192

Query: 219 YMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAYLWQEVFRKESIANIIQHFIRLDG 278
                +     ++L +       K      + HK  +    +  K  + +I+ +++  D 
Sbjct: 193 LRYGTIETPEKYYLEW-------KEENTGAYTHKLDFHLSRLCNKSRLLDIVHNYMAFDV 245

Query: 279 SSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLI 338
             KK       F     +  + RR           +  +I H+ GSGKS ++ W A    
Sbjct: 246 GVKKLCRHNQFFGVEAAKQHIARR-----------EGGIIWHTQGSGKSLTMVWLAKW-- 292

Query: 339 ETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELK 398
               I +++P SR         V++VTDR  LD+Q+      F  V   +      ++L 
Sbjct: 293 ----IRENVPNSR---------VLIVTDRTELDEQIE---SVFMGVDEEIYRTSSGNDLI 336

Query: 399 SALENGKK-IIITTIQKF---------PYIVDGIADLSDR---------RFAVIIDEAHS 439
           + L +    +I + + KF             D I++L               V +DE H 
Sbjct: 337 ATLNHPNPWLICSLVHKFGRRSEAEDSAATDDFISELQQSLTKTFRAKGDLFVFVDECHR 396

Query: 440 SQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATPKNTTLEKFGQRQA 499
           +Q G    KL+ AM  +  + L                 +  FT TP    L K  ++++
Sbjct: 397 TQSG----KLHNAMTAILPEAL-----------------FIGFTGTP----LMKKDKKKS 431

Query: 500 DGTYVPF-HLYSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQDNPEFD----SKKAQKR 554
              + P+ H Y   +A+ +G +LD+         Y   EK + D  E      S  A+ +
Sbjct: 432 VEVFGPYIHTYKFDEAVADGVVLDLRYEARDIDQYLTSEKKVDDWFEAKTRGLSNLAKTQ 491

Query: 555 LRAYVEASQETIDTKAEIMLEHFIKHVV-----NGKKLKGKGKGMVVTQNIESAIRYYRA 609
           L+    + Q+ + +K+   LE  +  ++       + + G+G  M+V  ++  A + Y  
Sbjct: 492 LKQKWGSMQKLLSSKSR--LEQIVNDILLDMDTRQRLMDGRGNAMLVCSSVYQACKVYEM 549

Query: 610 LTRQLNKMGNPFKVAIAFSGSKEVDGIEYTEADINGFPEGDTK---------DYFDVNYK 660
            + Q +  G   KVAI  S   +   I+  E    G  E   K         DYF+ + +
Sbjct: 550 FS-QTDLAG---KVAIVTSFRPDAASIKGEETGA-GLTEKLFKFSTYRKMLADYFEQSEE 604

Query: 661 R-----KEPDSPIPKHV--DQDAYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQAL 713
           +      E +  + +    +    RLL+V +K LTGFD P    +Y+DK +      QA+
Sbjct: 605 KVAGRIAEFERDVKQRFINEPGQMRLLIVVDKLLTGFDAPSATYLYIDKTMTDHTLFQAI 664

Query: 714 SRLNRSAPKYGKKTEDLFVLDF---FNSVDDIKT-----AFDPFYTSTTLSEATDVNVLH 765
            R+NR     G+  E  +++D+   F S+D   T     AFD +       +  DV+ L 
Sbjct: 665 CRVNRLD---GEDKEYGYIIDYKDLFRSLDKAITDYTTGAFDDY-------DQEDVDGLL 714

Query: 766 ELKDDMDDTDVYEWFE-VEEFNKRFFEGREAQDLSPIIDIAAARFNHELELENEFKVDFK 824
           + + +    D+    E V    +     R  QD        +      L  +   ++ F 
Sbjct: 715 KNRLEQAKLDLDSALEVVRSLCEPVRAPRTLQDYQHYFCGESGENQTALSEKEALRLSFY 774

Query: 825 VKAKQFVKIYGQIASIMP-------------YEVVQWEKLFWFLKFLIPKLSVEDPDKEA 871
               + ++ Y  +A+ MP              EV ++EKL + +K     L      + A
Sbjct: 775 QNVARLLRTYASLANEMPEAGYTAEETESIRAEVAEFEKLRYEIKLTGGDLLDMKRFEPA 834

Query: 872 LDSLLDSVDLSSYGLQRVKLNHSIELDDSETELDPQNPNPRGAYGPEAEKDPLDEIIKIF 931
           +  LLD                 +  D SE  +D +  +                +I++ 
Sbjct: 835 MRHLLDMY---------------VRADGSEVLMDFEELS----------------LIELI 863

Query: 932 NERWFQGWSATPEEQRVKFVNIAESIRNHPDFEAKYQNNADPHTRELAFEKMLKEIMLQR 991
            E+     +A P+E R     +AE+I N+       +N  +P         +L E++  R
Sbjct: 864 VEKGAAATAALPDEIRNNQDAMAETIENNVRKTIVDENPVNPKYYG-RMSLLLDELITLR 922

Query: 992 RKDELE 997
           R++ L+
Sbjct: 923 RQNALD 928