Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 958 a.a., type I site-specific deoxyribonuclease, HsdR family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 93.2 bits (230), Expect = 8e-23
 Identities = 143/634 (22%), Positives = 230/634 (36%), Gaps = 128/634 (20%)

Query: 139 NLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYR-DDRDA 197
           N F V +Q+           D+ + ING+PL+ +ELK         +   ++Y       
Sbjct: 100 NEFQVAQQISIEGKYK-NRYDVTILINGLPLVQVELKRRGLELKEAFKQIERYGIHSYGT 158

Query: 198 NQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGHKTAYL- 256
            Q L  F +  +       + Y  T +  +      F + F +      + H      L 
Sbjct: 159 GQGLFQFIQFFIISNGVNTKYYANTPIKDRQ-----FKQTFYWA-----DTHNKLITQLS 208

Query: 257 -WQEVFRKES-IANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVNGVGQ 314
            + +VF +   ++ +I  ++ L+ S+K      +L   R +Q      ++D   V    +
Sbjct: 209 AFADVFMEPCHLSKMITKYVVLNESNK------SLMVLRPYQFYATEAIIDR--VKTTTK 260

Query: 315 TYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDRRLLDKQL 374
              I H+ GSGK+          + ++  S  L       +P    V+ V DR+ LD Q 
Sbjct: 261 YGYIWHTTGSGKT----------LTSFKTSQILTN-----LPQVHKVVFVVDRKDLDYQT 305

Query: 375 RDNIKEFSEVKNIVAPAFKSSELKSALENGKKIIITTIQKFPYIVDG------IADLSDR 428
                 FS  K  +     +  L   L    K+I+TTIQK    V        +  L D+
Sbjct: 306 TKEFNSFS--KGSIDGTNDTGTLVKQLAGDNKLIVTTIQKLNTAVTKKRFFHKLETLQDK 363

Query: 429 RFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASYFAFTATP-- 486
           R   I DE H SQ G   + +                     +    N   F FT TP  
Sbjct: 364 RIVFIFDECHRSQFGKTHESI---------------------KSFFVNGQMFGFTGTPIF 402

Query: 487 -KNTTLEKFGQRQADGTYVP-FHLYSMKQAIEEGFILDVIANYTTYKSYYEIEKSIQDNP 544
            +N    ++G+R     +    H Y +  AI +  +L     Y      ++ +  +QD  
Sbjct: 403 EENAGTNEYGKRTTTMLFQDCLHKYVITDAIRDENVLKFSIEYI---QTFKRKDQVQD-- 457

Query: 545 EFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGK---GMVVTQNIE 601
                         VEA  E    +A   L + + +++   K K   +    +    ++E
Sbjct: 458 ------------INVEAIDEAEVMEASPRLNNIVDYIITHHKRKTHNQRFTAIFCVPSVE 505

Query: 602 SAIRYYRALTRQLNKMGNPFKVAIAFS--------GSKEVDGIE---------------- 637
             IRYY    ++  +  + +K+A  FS        G  E D                   
Sbjct: 506 VLIRYYVLFKKKAVEEQHDYKIATIFSYGANDELLGKDEQDNTNHFNISSRVSIAAEDAG 565

Query: 638 -YTEADI---NGFPEGDTKDY---FDVNYKRKEPDS------PIPKHVDQDAYRLLVVAN 684
            Y +A I     F +    DY   F  NY  K+  +       I K V      +L+V N
Sbjct: 566 PYGQATIKHPREFLDDFISDYNQTFGSNYSTKDSQTFYNYYQNIAKRVKNQEIDILLVVN 625

Query: 685 KYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNR 718
            +LTGFD   L  +YVDK L     +QA SR NR
Sbjct: 626 MFLTGFDSKHLNTLYVDKNLQYHGLIQAYSRTNR 659