Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1093 a.a., Type-1 restriction enzyme R protein from Alteromonas macleodii MIT1002

 Score =  110 bits (275), Expect = 5e-28
 Identities = 164/642 (25%), Positives = 263/642 (40%), Gaps = 128/642 (19%)

Query: 141 FSVTRQVCYSNANPLEEIDMVLFINGIPLITLELK----NPWTGQNAVYHGQKQYRDDRD 196
           F VTR     +  P    D+V F+NGIPL+ +E K    N   G        +  R+ R 
Sbjct: 140 FMVTRSGGVESRRP----DIVCFVNGIPLVVIEAKRPDGNAKKGPTIDEGISQSLRNQRH 195

Query: 197 ANQPLLNFARCLVHMAVDTDEV-YMTTKLAGKNTFFLPFN------------KGFNFGKG 243
              PLL FA   + ++++ +E  Y T     K  F+  +             K       
Sbjct: 196 DEIPLL-FAYSQMLLSINGNEGRYGTCGTPAK--FWAAWREEDISDAEMYALKNKTLKNE 252

Query: 244 NPINPHGHKTAY---LWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFP-------- 292
             +    H+ A     ++ +     +A   Q  + +   S  +L   T +F         
Sbjct: 253 QIVGLFSHRPAKDLDWYKSLTAAGELAVTGQDQLLISLLSPTRLLDMTRYFTLFDKKAGK 312

Query: 293 ---RYHQMDVVRRLVDHC---SVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDD 346
              RY Q+  ++RL++     S  G  +  +I H+ GSGKS ++ + +  LI    + + 
Sbjct: 313 IVARYQQVFGIKRLIERINTRSSTGGREGGVIWHTTGSGKSFTMVFLSKALI----LHES 368

Query: 347 LPGSRGKEMPLFDSVIVVTDRRLLDKQLRDNIKEFSEV--KNIVAPAFKSSELKSALENG 404
           L   R         ++VVTDR  L+ QL        E+  K     A  +S  + A + G
Sbjct: 369 LKQCR---------IVVVTDRVDLETQLSKTFASGGELAGKKDKEAAMATSGKRLAEQIG 419

Query: 405 K---KIIITTIQKF------PYIVDGIADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGF 455
           K   +II + IQKF      P  V+  +D+      V+IDE H SQ G N  ++ +A+  
Sbjct: 420 KGTERIIFSLIQKFNTATKMPECVNLSSDI-----IVLIDEGHRSQGGENHIRMKQAL-- 472

Query: 456 VSEDVLDKALQSAKNRKMRSNASYFAFTATP---KNTTLEKFGQRQADGTYVPFHLYSMK 512
                               NA++ AFT TP    + T  KFG           H Y+M+
Sbjct: 473 -------------------PNAAFVAFTGTPLLKDDKTTNKFGPI--------VHAYTMQ 505

Query: 513 QAIE---------EGFILDVIANYTTYKSYYE-IEKSIQDNPEFDSKKAQKRLRAYVEAS 562
           +A+E         E  I D+  N     S++E I + + D  + D K+   + +  V  +
Sbjct: 506 RAVEDQTVTPLLYEERIPDLDVNERAIDSWFERITEGLSDEQKADLKRKFAK-KGQVYGA 564

Query: 563 QETIDTKAEIMLEHFIKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMGNPFK 622
            + I   A  +  HFIK++  G K      G +   +  SAI+Y + L          F+
Sbjct: 565 DDRIRLIALDIANHFIKNIDEGLK------GQLACDSKVSAIKYKKYLDE-----AGLFE 613

Query: 623 VAIAFSGSKEVDGIEYTEADINGFPEGDT--KDYFDVNYKRKEPDSPIPKHVDQDAYRLL 680
            A+  S     +G   T  D    PE     KD      ++      I +    D+ ++L
Sbjct: 614 SAVVMSPPDSREG--NTAVDEASTPEVTQWWKDNIGSQDEQAYTKHLIERFDKDDSLKIL 671

Query: 681 VVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPK 722
           +V +K LTGFD+PK   +Y+DK L     +QA++R+NR  PK
Sbjct: 672 IVVDKLLTGFDEPKNTVLYIDKPLKEHNLIQAIARVNRLHPK 713