Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 967 a.a., Type-1 restriction enzyme R protein from Alteromonas macleodii MIT1002

 Score =  103 bits (256), Expect = 8e-26
 Identities = 139/643 (21%), Positives = 248/643 (38%), Gaps = 124/643 (19%)

Query: 134 KDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQY-R 192
           +D   N F VT+QV           D+ + +NG+PL+ +ELK         ++   +Y R
Sbjct: 94  EDVKQNHFQVTQQVTVEGRYK-NRYDVTILVNGLPLVQIELKRRGLELKEAFNQINRYQR 152

Query: 193 DDRDANQPLLNFARCLVHMAVDTDEVYMTT-KLAGKNTFFLPFNKGFNFGKGNPINPHGH 251
               A   L  + +  V       + Y    K + K TFF            + +N   +
Sbjct: 153 HSYWAEDGLFQYVQVFVISNGANTKYYANNRKQSFKQTFFW----------ADELNTKRY 202

Query: 252 KTAYLWQEVFRKES-IANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLVDHCSVN 310
                + +VF   + + ++I  ++ L+ +       R L   R +Q+     +++  +  
Sbjct: 203 SELTEFAQVFLTPNHLTDMITKYVVLNETD------RILMVMRPYQIYATEAIIERVAER 256

Query: 311 GVGQTYLIQHSAGSGKSNSITW---AAYQLIETYPISDDLPGSRGKEMPLFDSVIVVTDR 367
            V    LI ++  + K N   W    + + + ++  +  L G    +      V+ V DR
Sbjct: 257 QV----LIANAQSTDKMNGYIWHTTGSGKTLTSFKTAQLLTGDSQVQ-----KVVFVVDR 307

Query: 368 RLLDKQLRDNIKEFS-------EVKNIVAPAFKSSELKSALENGK---KIIITTIQKFPY 417
           + LD Q       FS       +   ++   F  + + +   N +   K+I+TTIQK   
Sbjct: 308 KDLDYQTSKEFNGFSKGCVDSTDNTKLLVDQFTDAPVAAEKVNEQRNTKLIVTTIQKLNN 367

Query: 418 IVDG------IADLSDRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNR 471
            +        +  + D+    I DE H SQ G    K+++                    
Sbjct: 368 AISHKRYSKRMEPVKDKNIVFIFDECHRSQFGDTHQKISQFF------------------ 409

Query: 472 KMRSNASYFAFTATP--KNTTLEKFGQRQA--DGTYVPFHLYSMKQAIEEGFILDVIANY 527
              +N   F FT TP      + K  ++    D  + P H Y++  AI++          
Sbjct: 410 ---TNHQMFGFTGTPIFVENAVSKSSRKYTTTDLFHKPLHKYTIVDAIKD---------- 456

Query: 528 TTYKSYYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTK----AEIMLEHFIKHVV- 582
                    E  ++ N E+  +  +K     ++   E IDTK    +EI LE  + +++ 
Sbjct: 457 ---------ENVLKFNVEYVGRYKKKDSANEIDIEVEGIDTKELMDSEIRLEKIVDYIIA 507

Query: 583 --NGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMGNPFKVAIAFSGSK-----EVDG 635
             N K    +   M    ++ + I+YY    ++  +  +  +VA  FS +      + DG
Sbjct: 508 QHNRKTHSREFTAMFCVSSVPALIKYYELFAKKKAQGKHNLRVATIFSYAANEEDPDADG 567

Query: 636 IEYTEADINGFPE--------------GDTKDYFDVNYKRKEPDS------PIPKHVDQD 675
           ++  + D    P+              GD  + F  +Y  K+ +S       I K V Q 
Sbjct: 568 LDDNDLDKVAEPQAVYSHSRDKLEQFIGDYNEMFSCSYTTKDSESFYNYYNDISKKVRQR 627

Query: 676 AYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNR 718
              +L+V N +LTGFD   L  ++VDK L     +QA SR NR
Sbjct: 628 KVDILLVVNMFLTGFDSKTLNTLFVDKNLKYHGLIQAYSRTNR 670