Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., Type I restriction enzyme EcoR124II R protein from Alteromonas macleodii MIT1002

 Score =  100 bits (248), Expect = 7e-25
 Identities = 185/846 (21%), Positives = 313/846 (36%), Gaps = 153/846 (18%)

Query: 133 KKDFSANLFSVTRQVCYSNANPLEEIDMVLFINGIPLITLELKNPWTGQNAVYHGQKQY- 191
           KK  + N   V +Q   +  + +   D+ + +NG+PL+ +ELK         ++   +Y 
Sbjct: 126 KKTIARNKVQVIKQFEQTGTH-VNRYDVTILVNGLPLVQIELKKRGVAIREAFNQIHRYS 184

Query: 192 RDDRDANQPLLNFARCLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFGKGNPINPHGH 251
           ++  +A   L  F +  V         +  T    KN+F   F   +       I     
Sbjct: 185 KESFNAENSLYKFLQLFVISNGTDTRYFANTTKRDKNSF--DFTMNWAKSDNTLIKDLKD 242

Query: 252 KTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLDKRTLFFPRYHQMDVVRRLV------- 304
            TA   Q    KE++  +I  +   D S+       TL   R +Q+    R++       
Sbjct: 243 FTATFLQ----KETLLEVILRYSVFDVSN-------TLLVMRPYQIAATERILWKIKSAF 291

Query: 305 DHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVV 364
           +  S +       I H+ GSGK+ +   AA        ++ DL G         D V  V
Sbjct: 292 NSKSWSNTESGGYIWHTTGSGKTLTSFKAAR-------LATDLDG--------IDKVFFV 336

Query: 365 TDRRLLDKQLRDNIKEFSEVKNIVAPAFKSSELKSAL-ENGKKIIITTIQKFPYIVDGIA 423
            DR+ LD Q     + FS   + V  +  ++ LKS L +   KI++TTIQK   ++   +
Sbjct: 337 VDRKDLDYQTMKEYQRFSP--DSVNGSDSTAGLKSNLGKEDNKIVVTTIQKLNNLIKSES 394

Query: 424 DLS--DRRFAVIIDEAHSSQDGHNQDKLNEAMGFVSEDVLDKALQSAKNRKMRSNASY-F 480
           DL   +++   I DE H SQ G  Q                      KN K +    Y F
Sbjct: 395 DLPIYNKQVVFIFDECHRSQFGEAQ----------------------KNLKRKFKKYYQF 432

Query: 481 AFTATP--------KNTTLEKFGQRQADGTYVPFHLYSMKQAIEEGFILDVIANYTTYKS 532
            FT TP          TT   FGQ+         H Y +  AI +  +L    +Y   + 
Sbjct: 433 GFTGTPIFPENALGAETTGSVFGQQ--------LHTYVITDAIRDEKVLKFKVDYNDVRP 484

Query: 533 YYEIEKSIQDNPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHFIKHVVNGKKLKGKGK 592
            +   KSI+   +     A +  +A++   +  I   ++ +L HF +             
Sbjct: 485 QF---KSIETEQDDKKLSAAENKQAFLHPMR--IREISQYILSHFNQKTHRAYSGAKGFN 539

Query: 593 GMVVTQNIESAIRYYRALTRQLNKMGN-----PFKVAIAFS---------------GSKE 632
            M    ++++A  YY        +  N     P ++A  FS                S E
Sbjct: 540 AMFAVSSVDAAKAYYETFKTLQAEAENGPTSRPLRIATIFSFAANEEQDAIGDILDESFE 599

Query: 633 VDGIEYTEADINGFPEGDTKDYFDVNYKRKEPD-----SPIPKHVDQDAYRLLVVANKYL 687
           V  +  +  +       D    F  NY             + + V      LL+V   +L
Sbjct: 600 VSAMNSSAKEFLSAAIADYNAMFKSNYGVDSNGFQNYYRDLAQRVKNQEVDLLIVVGMFL 659

Query: 688 TGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFD 747
           TGFD P L  ++VDK L     +QA SR NR                    + D    F 
Sbjct: 660 TGFDAPTLNTLFVDKNLRYHGLMQAFSRTNR--------------------IYDATKTFG 699

Query: 748 PFYTSTTLSEATDVNVLHELKDDMDDTDVYEWFEVEEFNKRFFEGREAQDLSPIIDIAAA 807
              T   L +AT +N +  L  D +  +V      +E+ + F +    Q     +DI   
Sbjct: 700 NIVTFRDLEQAT-INAI-TLFGDKNTKNVVLEKSYKEYMEGFNDIATGQARRGFVDIVK- 756

Query: 808 RFNHELELENEF----KVDFKVKAKQFVKIYGQIASIMPYEVVQWEKLFWFLKFLIPKLS 863
                 EL+  F     ++ +   K+F K++G+   +    ++Q    F  LK L    S
Sbjct: 757 ------ELQERFPNPDNIEKEQDKKEFAKLFGEY--LKAENILQNYDEFAGLKAL---QS 805

Query: 864 VEDPDKEALDSLLDSVDLSSYGLQRVKL----NHSIELDDSETELDPQNPNPRGAYGPEA 919
           ++  D++A++       L    +++++     +  +  D   T  D ++   R   G + 
Sbjct: 806 LDTSDEQAVEEFKSKYYLDDTDIEKMQTIDMPSERVIQDYRSTYNDTRDWLRRDKEGQDK 865

Query: 920 EKDPLD 925
           +K  +D
Sbjct: 866 DKSTVD 871