Pairwise Alignments

Query, 1022 a.a., type I restriction endonuclease subunit R from Vibrio cholerae E7946 ATCC 55056

Subject, 1080 a.a., hypothetical protein from Acinetobacter radioresistens SK82

 Score =  500 bits (1288), Expect = e-145
 Identities = 366/1077 (33%), Positives = 544/1077 (50%), Gaps = 143/1077 (13%)

Query: 45   IGSPSDFDKQYALDTRLFWQFLEDTQASELEKLKRTSPHDWQRKILERFDRMIKR----- 99
            +G+P  ++++ AL  +    F++ TQ+ + +K +R  P D +R  LE     +K+     
Sbjct: 24   LGTPQGYNRETALYEQDVLDFVQQTQSQDWQKFQRIFPQDTERHFLEAVVAQLKKADINA 83

Query: 100  -------HGVLRLLKKGLDVDDAFLSLMYPAPLASSSEKVKKDFSANLFSVTRQVCYSNA 152
                   +G L +L+ G+    A   L    P  + +     ++  N+  +  ++ YS  
Sbjct: 84   TDEQSRTYGTLGVLRHGVKTRSARFFLCQFKPEHALNPDTLANYKKNICRIVPELVYSPY 143

Query: 153  NPLEE------------IDMVLFINGIPLITLELKNPWTGQNAVYHGQKQYRDDR----- 195
                E            ID+VLFING P+ TLELK+ +  + AV +   QY+  R     
Sbjct: 144  ATAAEFQDTGKQAKKWRIDLVLFINGFPVATLELKSEF--KQAVQNAMLQYKRTRLPKDP 201

Query: 196  --DANQPLLNFAR-CLVHMAVDTDEVYMTTKLAGKNTFFLPFNKGFNFG-KGN--PINPH 249
              +  +PLL F R  LVH AV   EVYM T+LAG++TFFLPFNKG   G  GN  P + +
Sbjct: 202  ETNKPEPLLMFKRGALVHFAVSQYEVYMATQLAGEDTFFLPFNKGTQEGGAGNDVPEDQN 261

Query: 250  GHKTAYLWQEVFRKESIANIIQHFIRLDGSSKKQLD-----KRTLFFPRYHQMDVVRRLV 304
             + TAYLW EV   +++ NII  F+ L    K+  +     K  L FPRYHQ +VV +L+
Sbjct: 262  QYATAYLWNEVLTPDNLLNIIGRFVHLQIEEKEDWEGRKYKKELLIFPRYHQWNVVTQLI 321

Query: 305  DHCSVNGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPISDDLPGSRGKEMPLFDSVIVV 364
            +     G GQ YLIQHSAGSGKSNSI W A+QL   Y           +   LFDSVIVV
Sbjct: 322  NAALAEGTGQKYLIQHSAGSGKSNSIAWTAHQLSTLYD---------QQNQKLFDSVIVV 372

Query: 365  TDRRLLDKQLRDNIKEFSEVKNIVA-------PAFKSSELKSALENGKKIIITTIQKFPY 417
            TDR +LD QL+D I +F     +V           KS +L  ALE  + III TIQ FP+
Sbjct: 373  TDRTILDAQLQDTIYQFEHADGVVGRINNKEGDGSKSEKLAKALETSQPIIIVTIQTFPF 432

Query: 418  IVDGI---ADLSDRRFAVIIDEAHSSQDGHNQDKLNEAM---------GFVSEDVLDKAL 465
            ++  I    +L  RR+AVI DEAHSSQ G    +L E +            SED+LD  +
Sbjct: 433  VLRAIENSTNLKQRRYAVIADEAHSSQSGSTARQLKEVLMLEERDEDTELSSEDILDAVV 492

Query: 466  QSAKNRKMRSNASYFAFTATPKNTTLEKFGQR-------QADGTYVPFHLYSMKQAIEEG 518
             +   RK  +N SY+AFTATPK+ TL+ FG+                FH+YSM+QAIEEG
Sbjct: 493  AA---RKGSNNLSYYAFTATPKDKTLQLFGRLPNPELPPSKQNKPEAFHVYSMRQAIEEG 549

Query: 519  FILDVIANYTTYKSYYEIEKSIQD-NPEFDSKKAQKRLRAYVEASQETIDTKAEIMLEHF 577
            FILDV+ NYT Y   Y++++ I++ + + D+KKA+ RL  +V      I  K ++++EHF
Sbjct: 550  FILDVLKNYTNYNVVYKLKQKIEEADKQVDAKKAKIRLNQWVRLHDHNISQKVKVIVEHF 609

Query: 578  IKHVVNGKKLKGKGKGMVVTQNIESAIRYYRALTRQLNKMG-NPFKVAIAFSGSKEVDGI 636
              +V+    L G+ K MVVT + + A+RY  A  + +++ G    +  +AFSG  E +  
Sbjct: 610  KNNVMG--LLGGQAKAMVVTSSRKEAVRYKLAFDKYVSEQGYKSIQAMVAFSGEVEFND- 666

Query: 637  EYTEADINGFPEGDTKDYFDVNYKRKEPDSPIPKHVDQDAYRLLVVANKYLTGFDQPKLC 696
               + D +G   G T +  ++N   K  +  + K  D D Y++++VANK+ TGFDQPKLC
Sbjct: 667  --KDTDSSGLV-GQTFNERNMNPGLKGRE--MRKAFDSDDYQVMLVANKFQTGFDQPKLC 721

Query: 697  AMYVDKKLASVLCVQALSRLNRSAPKYGKKTEDLFVLDFFNSVDDIKTAFDPFYTSTTLS 756
            AMYVDKKL  V CVQ LSRLNR+ P  GK     FVLDFFN  ++I  AF P+Y +  L+
Sbjct: 722  AMYVDKKLGGVECVQTLSRLNRTYP--GKAESGTFVLDFFNDPEEILAAFQPYYQTAELA 779

Query: 757  EATDVNVLHELKDDMDDTDVYEWFEVEEFNKRFFEGREAQD-----LSPIIDIAAARFNH 811
            + ++ + + +L + +  T ++ W EVE+F + FF   ++         P ++    R+N 
Sbjct: 780  DVSNPDQIFDLFEKLKATKIFLWTEVEQFVEAFFTKNKSNAAISNICKPAVERWQKRYNQ 839

Query: 812  ELELEN--------------------------EFKVD------FKVKAKQFVKIYGQIAS 839
             +E  N                          + K++      FK     F + Y  ++ 
Sbjct: 840  AIEAHNTTRDMLERCKKTNDAVLIANADNAFKDAKLEKDKLEIFKKDLGSFTRFYEFMSQ 899

Query: 840  IMPYEVVQWEKLFWFLKFLIPKLSVEDPDKEALDSLLDSVDLSSYGLQRVKLNHSIELDD 899
            I+ Y+  + EKL  + + L P L       + +D  L +V +S Y L +++    I+L +
Sbjct: 900  IVDYDDKELEKLSLYARNLRPLLRETATQDDEVD--LSNVSMSHYRLSKIR-QQDIKLKE 956

Query: 900  SETELDPQNPNPRGAYGPEAEKDP-LDEIIKIFNERWFQGWSATPEEQRVKFVNIAESIR 958
               +   +  N  GA  P  +K+  L +II+  NE +      T        +N A ++R
Sbjct: 957  DAEDFKLEPGNDLGAAKPRDKKEEFLSQIIERLNEVFI-----TDNLTDKDMLNYAYTVR 1011

Query: 959  NHPDFEAKYQNNADPHTRELA----FEKMLKEIMLQRRKDELELYKLFAQDPAFKAS 1011
            +              +TRE A    F K + + +L       E       DPA KAS
Sbjct: 1012 DKLAENEIVMKQIANNTREQAMLGDFPKAMDDAILGSSAAHQEQMMQLLSDPA-KAS 1067