Pairwise Alignments

Query, 244 a.a., chemotaxis protein MotB from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., Flagellar motor protein from Variovorax sp. SCN45

 Score = 42.7 bits (99), Expect = 6e-09
 Identities = 51/220 (23%), Positives = 93/220 (42%), Gaps = 28/220 (12%)

Query: 18  PYWVSFSDLMSALLVIFILAAVALIIELTQKTNDVEAGIEELKQAELARKNIIYDVRDEL 77
           P W  F DLMS LL  F+L  V  +    +  + +E  +++ ++AE  R+  +      L
Sbjct: 15  PVWAVFGDLMSGLLGAFVLILVCALGMQMELASKLETEVQQ-RRAEAQRREAL---EQAL 70

Query: 78  AKRNVIVEIADNDTVIRIPESTLTFASGKSSIPNDATIQQAVKDIGVVLHSAIQKKDRFQ 137
           A       +  N+  I I  + L FA   + +  +   +Q +K +   L + +  +D   
Sbjct: 71  AGPLAAGRVTLNNGRIGISGNVL-FAFNSADLQPEG--RQLLKSLSAPLAAYLGSRD--- 124

Query: 138 YLDTIFIEGHTDSDSIH---YRGKGNWGLSTDRAISVWNVWQNELSLTPKLGDLENAYHA 194
             + + + G TD   +     R   NW LS  RA++V      E       G   ++  A
Sbjct: 125 --EILMVSGFTDDRQMRGDARRFADNWELSAQRALTVTRALIEE-------GMPSSSVFA 175

Query: 195 KLFSVSGYAATRRANLHEANQQEKSQNRRIDIRFTVKKPS 234
             F       + +A    A+ + +S+NRR+++  T +  S
Sbjct: 176 AAF------GSEQAVASNADAEGRSKNRRVEMAPTPRPSS 209