Pairwise Alignments

Query, 1149 a.a., helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 960 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Kangiella aquimarina DSM 16071

 Score = 67.0 bits (162), Expect = 7e-15
 Identities = 133/628 (21%), Positives = 234/628 (37%), Gaps = 140/628 (22%)

Query: 486  GALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPALIVAPLSLLENWKDEVDKTFKHS 545
            G +LAD++GLGKT  A   +       Q   E K+  LI+ P SL   W  E+       
Sbjct: 57   GVVLADEVGLGKTIEAGLVL------CQYWAERKRKLLIICPASLRRQWAQEL------- 103

Query: 546  PFKDVVILQSSAELNEYRMGGVEIRGQSASDDCLEPKYSLKVGKYFGPSRLDLPERLVIT 605
                         L+++ +  + +       D    K   + G Y   +     +++VI 
Sbjct: 104  -------------LDKFNLPSLVL-------DARAYKQLQEQGVYNPLNN----KQIVIM 139

Query: 606  TYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQTRAAKGLKADF----KLVATGTPVE 661
            +Y      +  +    W +VV DEA  ++N +    +  + L+       KL+ T TP++
Sbjct: 140  SYHYAARLEDRLVGESWDLVVIDEAHKLRNAHRESNKMGQALRRALNGRKKLLLTATPLQ 199

Query: 662  NSLADFWCLMDTACPGHL-GSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALM 720
            NSL + +  M T    H+ G  + FR +++         + E+++ RL   ++  +   +
Sbjct: 200  NSLMELYG-MSTLIDEHIFGDDKAFRKQFMQ-----GESDREDLKERLSLFVKRTLRNQV 253

Query: 721  LRRIKEDN---------------------------------------LKGLPLKHMYAGG 741
            L  +K  N                                       L GL L+ + A  
Sbjct: 254  LEYVKYTNRIALTVPFTPSDQEQALYDAVTAFLEKEDSYALPKRQKHLTGLILRKLLASS 313

Query: 742  EFENWKY-------LEELKSTMVGYQRDVYEGAISHQLENEESHALTTLMRLRDSSLHPR 794
             +            LE+LK   +  Q D+    I       +      +  L +      
Sbjct: 314  TYAVLNTIQVMKARLEQLKLEKLNTQDDLLSTIIEDDDLETDYLDEVDIDELLEEEAAKE 373

Query: 795  LSDGGRL-----DIPKNAKSARALYGESGKLVSLLETLDRVRSKQ------EKCIIFAVN 843
            + D  R+     ++    K A+ ++ +  K  +LL  LD   +K        K IIF  +
Sbjct: 374  VIDHKRVVEEIKELEGFIKQAQDIHNDE-KAKALLTALDLGFTKMAEMGAARKVIIFTES 432

Query: 844  KRLQSFLSVTLGQ---------------------IYNLGPLSVINGDAKAVAKRKSVPTR 882
            KR QS+L+  L Q                     IYN   +     D   V     V  R
Sbjct: 433  KRTQSYLASFLSQNGYINKIVTFSGSNNHPEATEIYNKWKIKYQGSDK--VTGSPQVDRR 490

Query: 883  KSMISDFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYRIGQE 942
             ++I  F+       I+++  AA  G+ +   + +++ +  WNP +  Q   R +R GQ+
Sbjct: 491  TALIDYFKDNAE---IMIATEAAAEGVNLQFCSLLINYDLPWNPQRVEQRIGRCHRYGQK 547

Query: 943  KEVHIYIPLLHHPEFESFDVNLHRLLTQKTLLKDAVVTPEDVIPQPAGVGGVVSGDLIDK 1002
             +V + I  L+   +   D  +  LLT K  L D V    D +     +G + SG   +K
Sbjct: 548  FDV-VVINFLNKRNYA--DQRVLELLTDKFCLFDGVFGASDSV-----LGSLESGVDFEK 599

Query: 1003 RITAAELDKLSWQQFEALCVELLAKITD 1030
            RI     +  S ++ E+    L  ++ D
Sbjct: 600  RIQQIYEECRSPEEIESAFETLQKELED 627